Gene annotation
Transcriptome id Sobic.010G097500.1
Synonym Sb10g008500
Functional annotation DNA polymerase lambda, putative, expressed
UniProt A0A194YIA1
Pfam PF14716 PF14791 PF10391 PF14792
Panther DB PTHR11276 PTHR11276:SF1
NCBI CDD KOG2534; DNA polymerase IV (family X)
KEGG Orthology K03512; DNA polymerase lambda
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G10520 : DNA polymerase lambda (POLL)
RAP-DB (Rice) LOC_Os06g13020.2 : DNA polymerase lambda, putative, expressed
MaizeGDB (Corn) Zm00025a049425
Brachypodium KQK18807
Barley HORVU7Hr1G039480.27 , HORVU7Hr1G039480.22 , HORVU7Hr1G039480.23 , HORVU7Hr1G039480.39 , HORVU7Hr1G039480.37 , HORVU7Hr1G039480.36 , HORVU7Hr1G039480.35 , HORVU7Hr1G039480.34 , HORVU7Hr1G039480.33 , HORVU7Hr1G039480.32 , HORVU7Hr1G039480.31 , HORVU7Hr1G039480.30 , HORVU7Hr1G039480.28 , HORVU7Hr1G039480.29 , HORVU7Hr1G039480.24 , HORVU7Hr1G039480.43 , HORVU7Hr1G039480.26 , HORVU7Hr1G039480.41 , HORVU7Hr1G039480.44 , HORVU7Hr1G039480.45 , HORVU7Hr1G039480.42 , HORVU7Hr1G039480.25 , HORVU7Hr1G039480.40
Wheat TraesCS7A02G193400 , TraesCS7D02G194700 , TraesCS7D02G194700 , TraesCS7D02G194700 , TraesCS7A02G193400 , TraesCS7B02G098700 , TraesCS7D02G194700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G153300 protein phosphatase 2C, putative, expressed K17679: ATP-dependent RNA helicase MSS116, mitochondrial
2 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
3 Sobic.002G043000 HEN1, putative, expressed -
4 Sobic.009G177200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
5 Sobic.006G008300 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
6 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
7 Sobic.003G104100 expressed protein -
8 Sobic.006G273900 expressed protein -
9 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
10 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
11 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
12 Sobic.001G541000 MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
13 Sobic.006G280100 SET domain containing protein, expressed -
14 Sobic.006G206200 - -
15 Sobic.001G453500 expressed protein -
16 Sobic.008G175400 U-box domain-containing protein, putative, expressed -
17 Sobic.010G041000 OsLonP2 - Putative Lon protease homologue, expressed K04485: radA, DNA repair protein RadA/Sms
18 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
19 Sobic.002G187600 expressed protein -
20 Sobic.003G072500 transcription factor X1, putative, expressed -


Gene co-expression network
sample Sobic010G097500 Sobic010G097500 Sobic010G153300 Sobic010G153300 Sobic010G097500--Sobic010G153300 Sobic007G059700 Sobic007G059700 Sobic010G097500--Sobic007G059700 Sobic002G043000 Sobic002G043000 Sobic010G097500--Sobic002G043000 Sobic009G177200 Sobic009G177200 Sobic010G097500--Sobic009G177200 Sobic006G008300 Sobic006G008300 Sobic010G097500--Sobic006G008300 Sobic004G215900 Sobic004G215900 Sobic010G097500--Sobic004G215900 Sobic003G104100 Sobic003G104100 Sobic010G097500--Sobic003G104100 Sobic006G273900 Sobic006G273900 Sobic010G097500--Sobic006G273900 Sobic001G199500 Sobic001G199500 Sobic010G097500--Sobic001G199500 Sobic009G191500 Sobic009G191500 Sobic010G153300--Sobic009G191500 Sobic010G153300--Sobic004G215900 Sobic010G153300--Sobic010G097500 Sobic010G038800 Sobic010G038800 Sobic010G153300--Sobic010G038800 Sobic010G153300--Sobic002G043000 Sobic010G153300--Sobic007G059700 Sobic008G068100 Sobic008G068100 Sobic010G153300--Sobic008G068100 Sobic005G098000 Sobic005G098000 Sobic010G153300--Sobic005G098000 Sobic006G206200 Sobic006G206200 Sobic010G153300--Sobic006G206200 Sobic007G059700--Sobic006G273900 Sobic007G060600 Sobic007G060600 Sobic007G059700--Sobic007G060600 Sobic004G151000 Sobic004G151000 Sobic007G059700--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic007G059700--Sobic001G049800 Sobic004G027300 Sobic004G027300 Sobic007G059700--Sobic004G027300 Sobic007G059700--Sobic009G191500 Sobic001G453500 Sobic001G453500 Sobic007G059700--Sobic001G453500 Sobic007G059700--Sobic010G097500 Sobic006G111200 Sobic006G111200 Sobic007G059700--Sobic006G111200 Sobic008G111600 Sobic008G111600 Sobic002G043000--Sobic008G111600 Sobic002G043000--Sobic004G215900 Sobic002G426100 Sobic002G426100 Sobic002G043000--Sobic002G426100 Sobic006G236000 Sobic006G236000 Sobic002G043000--Sobic006G236000 Sobic002G043000--Sobic008G068100 Sobic006G181800 Sobic006G181800 Sobic002G043000--Sobic006G181800 Sobic004G038100 Sobic004G038100 Sobic002G043000--Sobic004G038100 Sobic006G280100 Sobic006G280100 Sobic002G043000--Sobic006G280100 Sobic004G129500 Sobic004G129500 Sobic002G043000--Sobic004G129500 Sobic001G537400 Sobic001G537400 Sobic009G177200--Sobic001G537400 Sobic009G002900 Sobic009G002900 Sobic009G177200--Sobic009G002900 Sobic009G177200--Sobic001G199500 Sobic001G395200 Sobic001G395200 Sobic009G177200--Sobic001G395200 Sobic008G113300 Sobic008G113300 Sobic009G177200--Sobic008G113300 Sobic008G045000 Sobic008G045000 Sobic009G177200--Sobic008G045000 Sobic003G223000 Sobic003G223000 Sobic009G177200--Sobic003G223000 Sobic006G140400 Sobic006G140400 Sobic009G177200--Sobic006G140400 Sobic001G425700 Sobic001G425700 Sobic009G177200--Sobic001G425700 Sobic006G008300--Sobic001G395200 Sobic010G143600 Sobic010G143600 Sobic006G008300--Sobic010G143600 Sobic006G008300--Sobic003G104100 Sobic003G153900 Sobic003G153900 Sobic006G008300--Sobic003G153900 Sobic009G216500 Sobic009G216500 Sobic006G008300--Sobic009G216500 Sobic003G411700 Sobic003G411700 Sobic006G008300--Sobic003G411700 Sobic009G105400 Sobic009G105400 Sobic006G008300--Sobic009G105400 Sobic003G129500 Sobic003G129500 Sobic006G008300--Sobic003G129500 Sobic009G207400 Sobic009G207400 Sobic006G008300--Sobic009G207400 Sobic004G215900--Sobic008G068100 Sobic004G215900--Sobic006G236000 Sobic004G215900--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic004G215900--Sobic002G003300 Sobic001G024000 Sobic001G024000 Sobic004G215900--Sobic001G024000 Sobic004G215900--Sobic008G111600 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic004G215900--Sobic002G043000 Sobic003G104100--Sobic001G395200 Sobic008G052300 Sobic008G052300 Sobic003G104100--Sobic008G052300 Sobic005G163400 Sobic005G163400 Sobic003G104100--Sobic005G163400 Sobic003G104100--Sobic001G425700 Sobic006G067700 Sobic006G067700 Sobic003G104100--Sobic006G067700 Sobic010G024500 Sobic010G024500 Sobic003G104100--Sobic010G024500 Sobic004G179800 Sobic004G179800 Sobic003G104100--Sobic004G179800 Sobic006G084300 Sobic006G084300 Sobic003G104100--Sobic006G084300 Sobic009G259900 Sobic009G259900 Sobic003G104100--Sobic009G259900 Sobic006G273900--Sobic007G059700 Sobic006G273900--Sobic007G060600 Sobic006G273900--Sobic001G049800 Sobic006G273900--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G273900--Sobic001G368300 Sobic006G273900--Sobic004G027300 Sobic006G273900--Sobic009G191500 Sobic006G273900--Sobic004G215900 Sobic006G273900--Sobic006G111200 Sobic005G088900 Sobic005G088900 Sobic001G199500--Sobic005G088900 Sobic003G102700 Sobic003G102700 Sobic001G199500--Sobic003G102700 Sobic001G199500--Sobic006G084300 Sobic003G024000 Sobic003G024000 Sobic001G199500--Sobic003G024000 Sobic006G281900 Sobic006G281900 Sobic001G199500--Sobic006G281900 Sobic009G188900 Sobic009G188900 Sobic001G199500--Sobic009G188900 Sobic007G006800 Sobic007G006800 Sobic001G199500--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic001G199500--Sobic006G071628 Sobic003G144000 Sobic003G144000 Sobic001G199500--Sobic003G144000
Octagon: transcription factors


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