Gene annotation
Transcriptome id Sobic.010G041000.1
Synonym Sb10g003620
Functional annotation OsLonP2 - Putative Lon protease homologue, expressed
UniProt C5Z4B9
Pfam PF13541 PF13481
Panther DB PTHR32472 PTHR32472:SF10
NCBI CDD -
KEGG Orthology K04485; radA, DNA repair protein RadA/Sms
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G50340 : ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases
RAP-DB (Rice) LOC_Os06g05820.1 : OsLonP2 - Putative Lon protease homologue, expressed
MaizeGDB (Corn) Zm00025a041518
Brachypodium PNT76544 , PNT76545 , PNT76864 , PNT76861 , PNT76863 , PNT76862 , KQK20497
Barley HORVU7Hr1G022440.19 , HORVU7Hr1G022440.18 , HORVU7Hr1G022440.11 , HORVU7Hr1G022440.10 , HORVU7Hr1G022440.13 , HORVU7Hr1G022440.12 , HORVU7Hr1G022440.15 , HORVU7Hr1G022440.14 , HORVU7Hr1G022440.17 , HORVU7Hr1G022440.16 , HORVU7Hr1G022440.9 , HORVU7Hr1G022440.8 , HORVU7Hr1G022440.5 , HORVU7Hr1G022440.4 , HORVU7Hr1G022440.7 , HORVU7Hr1G022440.6 , HORVU7Hr1G022440.1 , HORVU7Hr1G022440.3 , HORVU7Hr1G022440.2 , HORVU7Hr1G022440.37 , HORVU7Hr1G022440.36 , HORVU7Hr1G022440.35 , HORVU7Hr1G022440.34 , HORVU7Hr1G022440.33 , HORVU7Hr1G022440.32 , HORVU7Hr1G022440.31 , HORVU7Hr1G022440.30 , HORVU7Hr1G022440.24 , HORVU7Hr1G022440.21 , HORVU7Hr1G022440.22 , HORVU7Hr1G022440.25 , HORVU7Hr1G022440.26 , HORVU7Hr1G022440.27 , HORVU7Hr1G022440.20 , HORVU7Hr1G022440.23 , HORVU7Hr1G022440.28 , HORVU7Hr1G022440.29
Wheat TraesCS7B02G005400 , TraesCS7D02G100800 , TraesCS7A02G106700
Populus PNT55426 , PNS22409


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G305100 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
2 Sobic.004G111000 bromodomain containing protein, expressed -
3 Sobic.003G098900 - -
4 Sobic.001G008000 PPR repeat domain containing protein, putative, expressed -
5 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
6 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -
7 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
8 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
9 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
10 Sobic.002G184400 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
11 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
12 Sobic.003G436600 expressed protein -
13 Sobic.010G097500 DNA polymerase lambda, putative, expressed K03512: DNA polymerase lambda
14 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
15 Sobic.003G207300 OsFBD3 - F-box and FBD domain containing protein, expressed -
16 Sobic.006G273900 expressed protein -
17 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
18 Sobic.010G215900 type II intron maturase protein, putative, expressed -
19 Sobic.003G209400 expressed protein -
20 Sobic.006G206200 - -


Gene co-expression network
sample Sobic010G041000 Sobic010G041000 Sobic004G305100 Sobic004G305100 Sobic010G041000--Sobic004G305100 Sobic004G111000 Sobic004G111000 Sobic010G041000--Sobic004G111000 Sobic003G098900 Sobic003G098900 Sobic010G041000--Sobic003G098900 Sobic001G008000 Sobic001G008000 Sobic010G041000--Sobic001G008000 Sobic003G361400 Sobic003G361400 Sobic010G041000--Sobic003G361400 Sobic001G502600 Sobic001G502600 Sobic010G041000--Sobic001G502600 Sobic002G110500 Sobic002G110500 Sobic010G041000--Sobic002G110500 Sobic004G038100 Sobic004G038100 Sobic010G041000--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic010G041000--Sobic007G059700 Sobic004G305100--Sobic003G098900 Sobic004G305100--Sobic010G041000 Sobic004G305100--Sobic001G502600 Sobic006G125900 Sobic006G125900 Sobic004G305100--Sobic006G125900 Sobic006G231400 Sobic006G231400 Sobic004G305100--Sobic006G231400 Sobic002G318800 Sobic002G318800 Sobic004G305100--Sobic002G318800 Sobic010G215900 Sobic010G215900 Sobic004G305100--Sobic010G215900 Sobic009G163600 Sobic009G163600 Sobic004G305100--Sobic009G163600 Sobic006G140400 Sobic006G140400 Sobic004G305100--Sobic006G140400 Sobic004G285000 Sobic004G285000 Sobic004G111000--Sobic004G285000 Sobic003G409200 Sobic003G409200 Sobic004G111000--Sobic003G409200 Sobic004G111000--Sobic010G215900 Sobic007G044100 Sobic007G044100 Sobic004G111000--Sobic007G044100 Sobic010G279900 Sobic010G279900 Sobic004G111000--Sobic010G279900 Sobic004G043750 Sobic004G043750 Sobic004G111000--Sobic004G043750 Sobic006G056000 Sobic006G056000 Sobic004G111000--Sobic006G056000 Sobic004G086200 Sobic004G086200 Sobic004G111000--Sobic004G086200 Sobic002G263700 Sobic002G263700 Sobic004G111000--Sobic002G263700 Sobic003G098900--Sobic004G305100 Sobic003G098900--Sobic010G041000 Sobic003G098900--Sobic004G111000 Sobic002G394800 Sobic002G394800 Sobic003G098900--Sobic002G394800 Sobic003G098900--Sobic004G285000 Sobic003G098900--Sobic010G215900 Sobic003G098900--Sobic003G361400 Sobic003G436600 Sobic003G436600 Sobic003G098900--Sobic003G436600 Sobic002G177500 Sobic002G177500 Sobic003G098900--Sobic002G177500 Sobic001G008000--Sobic001G502600 Sobic001G008000--Sobic010G041000 Sobic001G008000--Sobic007G059700 Sobic008G022701 Sobic008G022701 Sobic001G008000--Sobic008G022701 Sobic006G273900 Sobic006G273900 Sobic001G008000--Sobic006G273900 Sobic010G153300 Sobic010G153300 Sobic001G008000--Sobic010G153300 Sobic007G145100 Sobic007G145100 Sobic001G008000--Sobic007G145100 Sobic004G027300 Sobic004G027300 Sobic001G008000--Sobic004G027300 Sobic001G008000--Sobic004G305100 Sobic003G259600 Sobic003G259600 Sobic003G361400--Sobic003G259600 Sobic001G373000 Sobic001G373000 Sobic003G361400--Sobic001G373000 Sobic002G219900 Sobic002G219900 Sobic003G361400--Sobic002G219900 Sobic003G361400--Sobic004G038100 Sobic001G013300 Sobic001G013300 Sobic003G361400--Sobic001G013300 Sobic002G043000 Sobic002G043000 Sobic003G361400--Sobic002G043000 Sobic001G033900 Sobic001G033900 Sobic003G361400--Sobic001G033900 Sobic002G372500 Sobic002G372500 Sobic003G361400--Sobic002G372500 Sobic003G360300 Sobic003G360300 Sobic003G361400--Sobic003G360300 Sobic001G502600--Sobic001G008000 Sobic001G502600--Sobic004G305100 Sobic001G502600--Sobic010G041000 Sobic001G502600--Sobic006G273900 Sobic005G100900 Sobic005G100900 Sobic001G502600--Sobic005G100900 Sobic003G209400 Sobic003G209400 Sobic001G502600--Sobic003G209400 Sobic002G155000 Sobic002G155000 Sobic001G502600--Sobic002G155000 Sobic003G332900 Sobic003G332900 Sobic001G502600--Sobic003G332900 Sobic001G190400 Sobic001G190400 Sobic001G502600--Sobic001G190400 Sobic005G088900 Sobic005G088900 Sobic002G110500--Sobic005G088900 Sobic007G006800 Sobic007G006800 Sobic002G110500--Sobic007G006800 Sobic009G216500 Sobic009G216500 Sobic002G110500--Sobic009G216500 Sobic010G250800 Sobic010G250800 Sobic002G110500--Sobic010G250800 Sobic001G097400 Sobic001G097400 Sobic002G110500--Sobic001G097400 Sobic006G106200 Sobic006G106200 Sobic002G110500--Sobic006G106200 Sobic001G199500 Sobic001G199500 Sobic002G110500--Sobic001G199500 Sobic009G031500 Sobic009G031500 Sobic002G110500--Sobic009G031500 Sobic002G110500--Sobic010G041000 Sobic006G033101 Sobic006G033101 Sobic004G038100--Sobic006G033101 Sobic006G181800 Sobic006G181800 Sobic004G038100--Sobic006G181800 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic010G188000 Sobic010G188000 Sobic004G038100--Sobic010G188000 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic006G280100 Sobic006G280100 Sobic004G038100--Sobic006G280100 Sobic009G104900 Sobic009G104900 Sobic004G038100--Sobic009G104900 Sobic007G059700--Sobic006G273900 Sobic007G060600 Sobic007G060600 Sobic007G059700--Sobic007G060600 Sobic004G151000 Sobic004G151000 Sobic007G059700--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic007G059700--Sobic001G049800 Sobic007G059700--Sobic004G027300 Sobic009G191500 Sobic009G191500 Sobic007G059700--Sobic009G191500 Sobic001G453500 Sobic001G453500 Sobic007G059700--Sobic001G453500 Sobic010G097500 Sobic010G097500 Sobic007G059700--Sobic010G097500 Sobic006G111200 Sobic006G111200 Sobic007G059700--Sobic006G111200
Octagon: transcription factors


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