Gene annotation
Transcriptome id Sobic.001G502600.2
Synonym Sb01g046950
Functional annotation tetratricopeptide repeat containing protein, putative, expressed
UniProt C5WXW5
Pfam PF13424
Panther DB PTHR19959 PTHR19959:SF168
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G31240 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g05540.2 : tetratricopeptide repeat containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000666
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G502600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G008000 PPR repeat domain containing protein, putative, expressed -
2 Sobic.004G305100 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
3 Sobic.010G041000 OsLonP2 - Putative Lon protease homologue, expressed K04485: radA, DNA repair protein RadA/Sms
4 Sobic.006G273900 expressed protein -
5 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
6 Sobic.003G209400 expressed protein -
7 Sobic.002G155000 EMB1381, putative, expressed -
8 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
9 Sobic.001G190400 endonuclease/Exonuclease/phosphatase family protein, expressed -
10 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
11 Sobic.002G031700 - -
12 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
13 Sobic.009G254200 pentatricopeptide, putative, expressed -
14 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
15 Sobic.003G177000 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
16 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
17 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
18 Sobic.008G022701 - K17710: pentatricopeptide repeat domain-containing protein 1
19 Sobic.009G105200 PPR repeat containing protein, expressed -
20 Sobic.001G036300 aminopeptidase, putative, expressed K01254: leukotriene-A4 hydrolase


Gene co-expression network
sample Sobic001G502600 Sobic001G502600 Sobic001G008000 Sobic001G008000 Sobic001G502600--Sobic001G008000 Sobic004G305100 Sobic004G305100 Sobic001G502600--Sobic004G305100 Sobic010G041000 Sobic010G041000 Sobic001G502600--Sobic010G041000 Sobic006G273900 Sobic006G273900 Sobic001G502600--Sobic006G273900 Sobic005G100900 Sobic005G100900 Sobic001G502600--Sobic005G100900 Sobic003G209400 Sobic003G209400 Sobic001G502600--Sobic003G209400 Sobic002G155000 Sobic002G155000 Sobic001G502600--Sobic002G155000 Sobic003G332900 Sobic003G332900 Sobic001G502600--Sobic003G332900 Sobic001G190400 Sobic001G190400 Sobic001G502600--Sobic001G190400 Sobic001G008000--Sobic001G502600 Sobic001G008000--Sobic010G041000 Sobic007G059700 Sobic007G059700 Sobic001G008000--Sobic007G059700 Sobic008G022701 Sobic008G022701 Sobic001G008000--Sobic008G022701 Sobic001G008000--Sobic006G273900 Sobic010G153300 Sobic010G153300 Sobic001G008000--Sobic010G153300 Sobic007G145100 Sobic007G145100 Sobic001G008000--Sobic007G145100 Sobic004G027300 Sobic004G027300 Sobic001G008000--Sobic004G027300 Sobic001G008000--Sobic004G305100 Sobic003G098900 Sobic003G098900 Sobic004G305100--Sobic003G098900 Sobic004G305100--Sobic010G041000 Sobic004G305100--Sobic001G502600 Sobic006G125900 Sobic006G125900 Sobic004G305100--Sobic006G125900 Sobic006G231400 Sobic006G231400 Sobic004G305100--Sobic006G231400 Sobic002G318800 Sobic002G318800 Sobic004G305100--Sobic002G318800 Sobic010G215900 Sobic010G215900 Sobic004G305100--Sobic010G215900 Sobic009G163600 Sobic009G163600 Sobic004G305100--Sobic009G163600 Sobic006G140400 Sobic006G140400 Sobic004G305100--Sobic006G140400 Sobic010G041000--Sobic004G305100 Sobic004G111000 Sobic004G111000 Sobic010G041000--Sobic004G111000 Sobic010G041000--Sobic003G098900 Sobic010G041000--Sobic001G008000 Sobic003G361400 Sobic003G361400 Sobic010G041000--Sobic003G361400 Sobic010G041000--Sobic001G502600 Sobic002G110500 Sobic002G110500 Sobic010G041000--Sobic002G110500 Sobic004G038100 Sobic004G038100 Sobic010G041000--Sobic004G038100 Sobic010G041000--Sobic007G059700 Sobic006G273900--Sobic007G059700 Sobic007G060600 Sobic007G060600 Sobic006G273900--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic006G273900--Sobic001G049800 Sobic004G151000 Sobic004G151000 Sobic006G273900--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G273900--Sobic001G368300 Sobic006G273900--Sobic004G027300 Sobic009G191500 Sobic009G191500 Sobic006G273900--Sobic009G191500 Sobic004G215900 Sobic004G215900 Sobic006G273900--Sobic004G215900 Sobic006G111200 Sobic006G111200 Sobic006G273900--Sobic006G111200 Sobic002G238000 Sobic002G238000 Sobic005G100900--Sobic002G238000 Sobic009G071700 Sobic009G071700 Sobic005G100900--Sobic009G071700 Sobic007G114000 Sobic007G114000 Sobic005G100900--Sobic007G114000 Sobic003G425100 Sobic003G425100 Sobic005G100900--Sobic003G425100 Sobic001G119600 Sobic001G119600 Sobic005G100900--Sobic001G119600 Sobic002G262100 Sobic002G262100 Sobic005G100900--Sobic002G262100 Sobic004G173100 Sobic004G173100 Sobic005G100900--Sobic004G173100 Sobic001G485600 Sobic001G485600 Sobic005G100900--Sobic001G485600 Sobic008G165900 Sobic008G165900 Sobic005G100900--Sobic008G165900 Sobic009G007700 Sobic009G007700 Sobic003G209400--Sobic009G007700 Sobic002G412700 Sobic002G412700 Sobic003G209400--Sobic002G412700 Sobic006G112700 Sobic006G112700 Sobic003G209400--Sobic006G112700 Sobic010G085200 Sobic010G085200 Sobic003G209400--Sobic010G085200 Sobic008G080500 Sobic008G080500 Sobic003G209400--Sobic008G080500 Sobic007G097400 Sobic007G097400 Sobic003G209400--Sobic007G097400 Sobic004G034700 Sobic004G034700 Sobic003G209400--Sobic004G034700 Sobic008G017100 Sobic008G017100 Sobic003G209400--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic003G209400--Sobic002G356600 Sobic007G075800 Sobic007G075800 Sobic002G155000--Sobic007G075800 Sobic002G031700 Sobic002G031700 Sobic002G155000--Sobic002G031700 Sobic006G128400 Sobic006G128400 Sobic002G155000--Sobic006G128400 Sobic002G317100 Sobic002G317100 Sobic002G155000--Sobic002G317100 Sobic003G134000 Sobic003G134000 Sobic002G155000--Sobic003G134000 Sobic001G153300 Sobic001G153300 Sobic002G155000--Sobic001G153300 Sobic007G132200 Sobic007G132200 Sobic002G155000--Sobic007G132200 Sobic001G393900 Sobic001G393900 Sobic002G155000--Sobic001G393900 Sobic006G269800 Sobic006G269800 Sobic002G155000--Sobic006G269800 Sobic003G332900--Sobic008G165900 Sobic010G211500 Sobic010G211500 Sobic003G332900--Sobic010G211500 Sobic004G231600 Sobic004G231600 Sobic003G332900--Sobic004G231600 Sobic001G207200 Sobic001G207200 Sobic003G332900--Sobic001G207200 Sobic003G332900--Sobic008G022701 Sobic002G131000 Sobic002G131000 Sobic003G332900--Sobic002G131000 Sobic001G224200 Sobic001G224200 Sobic003G332900--Sobic001G224200 Sobic009G238100 Sobic009G238100 Sobic003G332900--Sobic009G238100 Sobic003G332900--Sobic006G128400 Sobic001G190400--Sobic002G155000 Sobic001G190400--Sobic002G031700 Sobic001G190400--Sobic001G502600 Sobic010G204900 Sobic010G204900 Sobic001G190400--Sobic010G204900 Sobic002G122100 Sobic002G122100 Sobic001G190400--Sobic002G122100 Sobic010G130300 Sobic010G130300 Sobic001G190400--Sobic010G130300 Sobic001G025800 Sobic001G025800 Sobic001G190400--Sobic001G025800 Sobic004G351800 Sobic004G351800 Sobic001G190400--Sobic004G351800 Sobic001G190400--Sobic007G075800
Octagon: transcription factors


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