Gene annotation
Transcriptome id Sobic.009G105200.1
Synonym Sb09g017100
Functional annotation PPR repeat containing protein, expressed
UniProt C5YWD7
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF429
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62470 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g55340.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a043428 , Zm00025a037138
Brachypodium KQK06761
Barley HORVU1Hr1G059630.2 , HORVU1Hr1G059630.3 , HORVU1Hr1G059630.1 , HORVU1Hr1G059630.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
2 Sobic.001G544500 expressed protein -
3 Sobic.007G000300 expressed protein -
4 Sobic.009G005400 ABC transporter, ATP-binding protein, putative, expressed -
5 Sobic.006G275000 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
6 Sobic.002G052400 PPR repeat containing protein, expressed -
7 Sobic.007G225000 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
8 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
9 Sobic.001G261900 caffeine-induced death protein 1, putative, expressed -
10 Sobic.002G082100 serine/threonine-protein kinase, putative, expressed -
11 Sobic.004G351800 PPR repeat containing protein, expressed -
12 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
13 Sobic.004G297500 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
14 Sobic.005G012700 expressed protein -
15 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
16 Sobic.002G377800 heat shock protein DnaJ, putative, expressed -
17 Sobic.003G283800 transmembrane protein, putative, expressed -
18 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
19 Sobic.010G204900 formamidopyrimidine-DNA glycosylase, putative, expressed K10563: mutM, formamidopyrimidine-DNA glycosylase
20 Sobic.003G209400 expressed protein -


Gene co-expression network
sample Sobic009G105200 Sobic009G105200 Sobic010G228700 Sobic010G228700 Sobic009G105200--Sobic010G228700 Sobic001G544500 Sobic001G544500 Sobic009G105200--Sobic001G544500 Sobic007G000300 Sobic007G000300 Sobic009G105200--Sobic007G000300 Sobic009G005400 Sobic009G005400 Sobic009G105200--Sobic009G005400 Sobic006G275000 Sobic006G275000 Sobic009G105200--Sobic006G275000 Sobic002G052400 Sobic002G052400 Sobic009G105200--Sobic002G052400 Sobic007G225000 Sobic007G225000 Sobic009G105200--Sobic007G225000 Sobic010G100800 Sobic010G100800 Sobic009G105200--Sobic010G100800 Sobic001G261900 Sobic001G261900 Sobic009G105200--Sobic001G261900 Sobic010G228700--Sobic001G544500 Sobic002G040800 Sobic002G040800 Sobic010G228700--Sobic002G040800 Sobic009G105800 Sobic009G105800 Sobic010G228700--Sobic009G105800 Sobic010G228700--Sobic009G105200 Sobic010G171100 Sobic010G171100 Sobic010G228700--Sobic010G171100 Sobic010G228700--Sobic007G000300 Sobic002G238000 Sobic002G238000 Sobic010G228700--Sobic002G238000 Sobic001G119900 Sobic001G119900 Sobic010G228700--Sobic001G119900 Sobic006G125900 Sobic006G125900 Sobic010G228700--Sobic006G125900 Sobic001G544500--Sobic010G228700 Sobic003G285000 Sobic003G285000 Sobic001G544500--Sobic003G285000 Sobic001G544500--Sobic002G040800 Sobic008G051200 Sobic008G051200 Sobic001G544500--Sobic008G051200 Sobic001G222250 Sobic001G222250 Sobic001G544500--Sobic001G222250 Sobic001G544500--Sobic009G105200 Sobic001G453400 Sobic001G453400 Sobic001G544500--Sobic001G453400 Sobic004G321700 Sobic004G321700 Sobic001G544500--Sobic004G321700 Sobic001G003500 Sobic001G003500 Sobic001G544500--Sobic001G003500 Sobic001G275300 Sobic001G275300 Sobic007G000300--Sobic001G275300 Sobic003G241700 Sobic003G241700 Sobic007G000300--Sobic003G241700 Sobic001G393900 Sobic001G393900 Sobic007G000300--Sobic001G393900 Sobic006G088200 Sobic006G088200 Sobic007G000300--Sobic006G088200 Sobic003G062300 Sobic003G062300 Sobic007G000300--Sobic003G062300 Sobic003G016900 Sobic003G016900 Sobic007G000300--Sobic003G016900 Sobic007G000300--Sobic001G261900 Sobic007G212300 Sobic007G212300 Sobic007G000300--Sobic007G212300 Sobic007G173500 Sobic007G173500 Sobic007G000300--Sobic007G173500 Sobic001G025800 Sobic001G025800 Sobic009G005400--Sobic001G025800 Sobic009G005400--Sobic010G100800 Sobic003G267500 Sobic003G267500 Sobic009G005400--Sobic003G267500 Sobic010G204900 Sobic010G204900 Sobic009G005400--Sobic010G204900 Sobic004G144400 Sobic004G144400 Sobic009G005400--Sobic004G144400 Sobic008G038600 Sobic008G038600 Sobic009G005400--Sobic008G038600 Sobic009G005400--Sobic009G105200 Sobic009G005400--Sobic006G275000 Sobic008G157200 Sobic008G157200 Sobic009G005400--Sobic008G157200 Sobic006G275000--Sobic009G005400 Sobic006G275000--Sobic009G105200 Sobic006G275000--Sobic001G393900 Sobic008G017100 Sobic008G017100 Sobic006G275000--Sobic008G017100 Sobic005G026400 Sobic005G026400 Sobic006G275000--Sobic005G026400 Sobic004G354000 Sobic004G354000 Sobic006G275000--Sobic004G354000 Sobic006G275000--Sobic007G225000 Sobic010G262100 Sobic010G262100 Sobic006G275000--Sobic010G262100 Sobic010G224700 Sobic010G224700 Sobic006G275000--Sobic010G224700 Sobic004G351800 Sobic004G351800 Sobic002G052400--Sobic004G351800 Sobic002G052400--Sobic008G017100 Sobic002G377800 Sobic002G377800 Sobic002G052400--Sobic002G377800 Sobic002G052400--Sobic009G105200 Sobic007G145100 Sobic007G145100 Sobic002G052400--Sobic007G145100 Sobic002G052400--Sobic001G261900 Sobic002G373950 Sobic002G373950 Sobic002G052400--Sobic002G373950 Sobic008G022701 Sobic008G022701 Sobic002G052400--Sobic008G022701 Sobic002G052400--Sobic010G228700 Sobic004G236400 Sobic004G236400 Sobic007G225000--Sobic004G236400 Sobic003G067100 Sobic003G067100 Sobic007G225000--Sobic003G067100 Sobic005G128400 Sobic005G128400 Sobic007G225000--Sobic005G128400 Sobic006G058100 Sobic006G058100 Sobic007G225000--Sobic006G058100 Sobic010G094700 Sobic010G094700 Sobic007G225000--Sobic010G094700 Sobic007G225000--Sobic007G212300 Sobic006G049900 Sobic006G049900 Sobic007G225000--Sobic006G049900 Sobic001G352900 Sobic001G352900 Sobic007G225000--Sobic001G352900 Sobic001G016600 Sobic001G016600 Sobic007G225000--Sobic001G016600 Sobic001G501300 Sobic001G501300 Sobic010G100800--Sobic001G501300 Sobic010G100800--Sobic001G261900 Sobic005G026000 Sobic005G026000 Sobic010G100800--Sobic005G026000 Sobic001G300100 Sobic001G300100 Sobic010G100800--Sobic001G300100 Sobic002G404200 Sobic002G404200 Sobic010G100800--Sobic002G404200 Sobic010G086900 Sobic010G086900 Sobic010G100800--Sobic010G086900 Sobic002G031700 Sobic002G031700 Sobic010G100800--Sobic002G031700 Sobic010G100800--Sobic001G275300 Sobic003G193200 Sobic003G193200 Sobic010G100800--Sobic003G193200 Sobic001G261900--Sobic010G100800 Sobic001G261900--Sobic007G212300 Sobic004G107200 Sobic004G107200 Sobic001G261900--Sobic004G107200 Sobic004G176000 Sobic004G176000 Sobic001G261900--Sobic004G176000 Sobic006G119400 Sobic006G119400 Sobic001G261900--Sobic006G119400 Sobic008G132900 Sobic008G132900 Sobic001G261900--Sobic008G132900 Sobic001G261900--Sobic004G351800 Sobic001G261900--Sobic007G000300 Sobic007G065100 Sobic007G065100 Sobic001G261900--Sobic007G065100
Octagon: transcription factors


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