Gene annotation
Transcriptome id Sobic.010G228700.1
Synonym ATCPSF30, CPSF30, Sb10g027200
Functional annotation ATCPSF30/CPSF30, putative, expressed
UniProt C5Z7U3
Pfam PF04146
Panther DB PTHR12357 PTHR12357:SF3
NCBI CDD KOG1902; Putative signal transduction protein involved in RNA splicing
KEGG Orthology K14404; CPSF4, cleavage and polyadenylation specificity factor subunit 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G30460 : cleavage and polyadenylation specificity factor 30
RAP-DB (Rice) LOC_Os06g46400.1 : ATCPSF30/CPSF30, putative, expressed
MaizeGDB (Corn) Zm00025a018042 , Zm00025a041910
Brachypodium KQK17113
Barley HORVU7Hr1G106340.8 , HORVU7Hr1G106340.7 , HORVU7Hr1G106340.6 , HORVU7Hr1G106340.5 , HORVU7Hr1G106340.4 , HORVU7Hr1G106340.3 , HORVU7Hr1G106340.2
Wheat TraesCS7A02G461800 , TraesCS7B02G363200 , TraesCS7B02G363200 , TraesCS7D02G450100
Populus PNT12518


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cDNA sequences
Sobic.010G228700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G544500 expressed protein -
2 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
3 Sobic.009G105800 FHA domain containing protein, putative, expressed K13108: smad nuclear-interacting protein 1
4 Sobic.009G105200 PPR repeat containing protein, expressed -
5 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
6 Sobic.007G000300 expressed protein -
7 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
8 Sobic.001G119900 - K12858: DDX23, ATP-dependent RNA helicase DDX23/PRP28
9 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
10 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
11 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
12 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
13 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
14 Sobic.005G122700 PPR repeat domain containing protein, putative, expressed -
15 Sobic.003G168100 BZIP protein, putative, expressed -
16 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
17 Sobic.003G285000 OsFBX85 - F-box domain containing protein, expressed -
18 Sobic.007G145100 SGT1 protein, putative, expressed -
19 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
20 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3


Gene co-expression network
sample Sobic010G228700 Sobic010G228700 Sobic001G544500 Sobic001G544500 Sobic010G228700--Sobic001G544500 Sobic002G040800 Sobic002G040800 Sobic010G228700--Sobic002G040800 Sobic009G105800 Sobic009G105800 Sobic010G228700--Sobic009G105800 Sobic009G105200 Sobic009G105200 Sobic010G228700--Sobic009G105200 Sobic010G171100 Sobic010G171100 Sobic010G228700--Sobic010G171100 Sobic007G000300 Sobic007G000300 Sobic010G228700--Sobic007G000300 Sobic002G238000 Sobic002G238000 Sobic010G228700--Sobic002G238000 Sobic001G119900 Sobic001G119900 Sobic010G228700--Sobic001G119900 Sobic006G125900 Sobic006G125900 Sobic010G228700--Sobic006G125900 Sobic001G544500--Sobic010G228700 Sobic003G285000 Sobic003G285000 Sobic001G544500--Sobic003G285000 Sobic001G544500--Sobic002G040800 Sobic008G051200 Sobic008G051200 Sobic001G544500--Sobic008G051200 Sobic001G222250 Sobic001G222250 Sobic001G544500--Sobic001G222250 Sobic001G544500--Sobic009G105200 Sobic001G453400 Sobic001G453400 Sobic001G544500--Sobic001G453400 Sobic004G321700 Sobic004G321700 Sobic001G544500--Sobic004G321700 Sobic001G003500 Sobic001G003500 Sobic001G544500--Sobic001G003500 Sobic002G040800--Sobic010G228700 Sobic009G094800 Sobic009G094800 Sobic002G040800--Sobic009G094800 Sobic002G040800--Sobic001G544500 Sobic002G174900 Sobic002G174900 Sobic002G040800--Sobic002G174900 Sobic008G001400 Sobic008G001400 Sobic002G040800--Sobic008G001400 Sobic004G135300 Sobic004G135300 Sobic002G040800--Sobic004G135300 Sobic006G042200 Sobic006G042200 Sobic002G040800--Sobic006G042200 Sobic003G368800 Sobic003G368800 Sobic002G040800--Sobic003G368800 Sobic006G263000 Sobic006G263000 Sobic002G040800--Sobic006G263000 Sobic009G105800--Sobic007G000300 Sobic009G105800--Sobic010G228700 Sobic010G078900 Sobic010G078900 Sobic009G105800--Sobic010G078900 Sobic009G182600 Sobic009G182600 Sobic009G105800--Sobic009G182600 Sobic001G261900 Sobic001G261900 Sobic009G105800--Sobic001G261900 Sobic009G126300 Sobic009G126300 Sobic009G105800--Sobic009G126300 Sobic005G220000 Sobic005G220000 Sobic009G105800--Sobic005G220000 Sobic004G237100 Sobic004G237100 Sobic009G105800--Sobic004G237100 Sobic003G379200 Sobic003G379200 Sobic009G105800--Sobic003G379200 Sobic009G105200--Sobic010G228700 Sobic009G105200--Sobic001G544500 Sobic009G105200--Sobic007G000300 Sobic009G005400 Sobic009G005400 Sobic009G105200--Sobic009G005400 Sobic006G275000 Sobic006G275000 Sobic009G105200--Sobic006G275000 Sobic002G052400 Sobic002G052400 Sobic009G105200--Sobic002G052400 Sobic007G225000 Sobic007G225000 Sobic009G105200--Sobic007G225000 Sobic010G100800 Sobic010G100800 Sobic009G105200--Sobic010G100800 Sobic009G105200--Sobic001G261900 Sobic004G095300 Sobic004G095300 Sobic010G171100--Sobic004G095300 Sobic003G122500 Sobic003G122500 Sobic010G171100--Sobic003G122500 Sobic003G123000 Sobic003G123000 Sobic010G171100--Sobic003G123000 Sobic010G171100--Sobic010G228700 Sobic010G171100--Sobic005G220000 Sobic010G085200 Sobic010G085200 Sobic010G171100--Sobic010G085200 Sobic001G088100 Sobic001G088100 Sobic010G171100--Sobic001G088100 Sobic002G058700 Sobic002G058700 Sobic010G171100--Sobic002G058700 Sobic007G084100 Sobic007G084100 Sobic010G171100--Sobic007G084100 Sobic001G275300 Sobic001G275300 Sobic007G000300--Sobic001G275300 Sobic003G241700 Sobic003G241700 Sobic007G000300--Sobic003G241700 Sobic001G393900 Sobic001G393900 Sobic007G000300--Sobic001G393900 Sobic006G088200 Sobic006G088200 Sobic007G000300--Sobic006G088200 Sobic003G062300 Sobic003G062300 Sobic007G000300--Sobic003G062300 Sobic003G016900 Sobic003G016900 Sobic007G000300--Sobic003G016900 Sobic007G000300--Sobic001G261900 Sobic007G212300 Sobic007G212300 Sobic007G000300--Sobic007G212300 Sobic007G173500 Sobic007G173500 Sobic007G000300--Sobic007G173500 Sobic005G100900 Sobic005G100900 Sobic002G238000--Sobic005G100900 Sobic008G165900 Sobic008G165900 Sobic002G238000--Sobic008G165900 Sobic009G071700 Sobic009G071700 Sobic002G238000--Sobic009G071700 Sobic002G238000--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic002G238000--Sobic002G262100 Sobic002G238000--Sobic010G228700 Sobic001G224200 Sobic001G224200 Sobic002G238000--Sobic001G224200 Sobic002G092050 Sobic002G092050 Sobic002G238000--Sobic002G092050 Sobic004G268100 Sobic004G268100 Sobic002G238000--Sobic004G268100 Sobic001G119900--Sobic003G122500 Sobic001G119900--Sobic010G228700 Sobic004G235300 Sobic004G235300 Sobic001G119900--Sobic004G235300 Sobic001G119900--Sobic008G051200 Sobic002G083900 Sobic002G083900 Sobic001G119900--Sobic002G083900 Sobic009G155250 Sobic009G155250 Sobic001G119900--Sobic009G155250 Sobic001G119900--Sobic010G085200 Sobic001G251100 Sobic001G251100 Sobic001G119900--Sobic001G251100 Sobic002G052700 Sobic002G052700 Sobic001G119900--Sobic002G052700 Sobic006G125900--Sobic001G453400 Sobic001G145400 Sobic001G145400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic004G340400 Sobic004G340400 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400
Octagon: transcription factors


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