Gene annotation
Transcriptome id Sobic.009G105800.1
Synonym Sb09g017160, DDL
Functional annotation FHA domain containing protein, putative, expressed
UniProt A0A1B6P826
Pfam PF00498
Panther DB PTHR23308
NCBI CDD KOG1882; Transcriptional regulator SNIP1, contains FHA domain
KEGG Orthology K13108; smad nuclear-interacting protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G20550 : SMAD/FHA domain-containing protein
RAP-DB (Rice) LOC_Os05g46780.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a043422
Brachypodium PNT64223 , KQJ89520
Barley HORVU6Hr1G092820.10 , HORVU6Hr1G092820.9 , HORVU6Hr1G092820.8 , HORVU6Hr1G092820.1 , HORVU6Hr1G092820.2 , HORVU6Hr1G092820.5 , HORVU6Hr1G092820.4 , HORVU6Hr1G092820.7 , HORVU6Hr1G092820.6
Wheat -
Populus -


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cDNA sequences
Sobic.009G105800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G000300 expressed protein -
2 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
3 Sobic.010G078900 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
4 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
5 Sobic.001G261900 caffeine-induced death protein 1, putative, expressed -
6 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
7 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
8 Sobic.004G237100 AP2/EREBP transcription factor BABY BOOM, putative, expressed -
9 Sobic.003G379200 wound-responsive family protein, putative, expressed -
10 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
11 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
12 Sobic.003G138900 aminotransferase, putative, expressed -
13 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
14 Sobic.001G544500 expressed protein -
15 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
16 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
17 Sobic.002G068100 aminoacyl-tRNA synthetase, putative, expressed -
18 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
19 Sobic.005G128400 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
20 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5


Gene co-expression network
sample Sobic009G105800 Sobic009G105800 Sobic007G000300 Sobic007G000300 Sobic009G105800--Sobic007G000300 Sobic010G228700 Sobic010G228700 Sobic009G105800--Sobic010G228700 Sobic010G078900 Sobic010G078900 Sobic009G105800--Sobic010G078900 Sobic009G182600 Sobic009G182600 Sobic009G105800--Sobic009G182600 Sobic001G261900 Sobic001G261900 Sobic009G105800--Sobic001G261900 Sobic009G126300 Sobic009G126300 Sobic009G105800--Sobic009G126300 Sobic005G220000 Sobic005G220000 Sobic009G105800--Sobic005G220000 Sobic004G237100 Sobic004G237100 Sobic009G105800--Sobic004G237100 Sobic003G379200 Sobic003G379200 Sobic009G105800--Sobic003G379200 Sobic001G275300 Sobic001G275300 Sobic007G000300--Sobic001G275300 Sobic003G241700 Sobic003G241700 Sobic007G000300--Sobic003G241700 Sobic001G393900 Sobic001G393900 Sobic007G000300--Sobic001G393900 Sobic006G088200 Sobic006G088200 Sobic007G000300--Sobic006G088200 Sobic003G062300 Sobic003G062300 Sobic007G000300--Sobic003G062300 Sobic003G016900 Sobic003G016900 Sobic007G000300--Sobic003G016900 Sobic007G000300--Sobic001G261900 Sobic007G212300 Sobic007G212300 Sobic007G000300--Sobic007G212300 Sobic007G173500 Sobic007G173500 Sobic007G000300--Sobic007G173500 Sobic001G544500 Sobic001G544500 Sobic010G228700--Sobic001G544500 Sobic002G040800 Sobic002G040800 Sobic010G228700--Sobic002G040800 Sobic010G228700--Sobic009G105800 Sobic009G105200 Sobic009G105200 Sobic010G228700--Sobic009G105200 Sobic010G171100 Sobic010G171100 Sobic010G228700--Sobic010G171100 Sobic010G228700--Sobic007G000300 Sobic002G238000 Sobic002G238000 Sobic010G228700--Sobic002G238000 Sobic001G119900 Sobic001G119900 Sobic010G228700--Sobic001G119900 Sobic006G125900 Sobic006G125900 Sobic010G228700--Sobic006G125900 Sobic010G078900--Sobic007G212300 Sobic004G246900 Sobic004G246900 Sobic010G078900--Sobic004G246900 Sobic001G227400 Sobic001G227400 Sobic010G078900--Sobic001G227400 Sobic001G154900 Sobic001G154900 Sobic010G078900--Sobic001G154900 Sobic010G078900--Sobic009G126300 Sobic003G194500 Sobic003G194500 Sobic010G078900--Sobic003G194500 Sobic001G261501 Sobic001G261501 Sobic010G078900--Sobic001G261501 Sobic001G088100 Sobic001G088100 Sobic010G078900--Sobic001G088100 Sobic001G431000 Sobic001G431000 Sobic010G078900--Sobic001G431000 Sobic009G182600--Sobic009G126300 Sobic002G179400 Sobic002G179400 Sobic009G182600--Sobic002G179400 Sobic001G493700 Sobic001G493700 Sobic009G182600--Sobic001G493700 Sobic004G040500 Sobic004G040500 Sobic009G182600--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic009G182600--Sobic004G204100 Sobic002G164200 Sobic002G164200 Sobic009G182600--Sobic002G164200 Sobic009G255600 Sobic009G255600 Sobic009G182600--Sobic009G255600 Sobic001G137000 Sobic001G137000 Sobic009G182600--Sobic001G137000 Sobic008G033900 Sobic008G033900 Sobic009G182600--Sobic008G033900 Sobic010G100800 Sobic010G100800 Sobic001G261900--Sobic010G100800 Sobic001G261900--Sobic007G212300 Sobic004G107200 Sobic004G107200 Sobic001G261900--Sobic004G107200 Sobic004G176000 Sobic004G176000 Sobic001G261900--Sobic004G176000 Sobic006G119400 Sobic006G119400 Sobic001G261900--Sobic006G119400 Sobic008G132900 Sobic008G132900 Sobic001G261900--Sobic008G132900 Sobic004G351800 Sobic004G351800 Sobic001G261900--Sobic004G351800 Sobic001G261900--Sobic007G000300 Sobic007G065100 Sobic007G065100 Sobic001G261900--Sobic007G065100 Sobic009G126300--Sobic009G182600 Sobic009G126300--Sobic001G493700 Sobic007G168300 Sobic007G168300 Sobic009G126300--Sobic007G168300 Sobic009G126300--Sobic001G137000 Sobic009G126300--Sobic002G179400 Sobic004G088501 Sobic004G088501 Sobic009G126300--Sobic004G088501 Sobic009G126300--Sobic009G255600 Sobic001G117200 Sobic001G117200 Sobic009G126300--Sobic001G117200 Sobic002G388500 Sobic002G388500 Sobic009G126300--Sobic002G388500 Sobic001G111600 Sobic001G111600 Sobic005G220000--Sobic001G111600 Sobic002G145800 Sobic002G145800 Sobic005G220000--Sobic002G145800 Sobic007G183900 Sobic007G183900 Sobic005G220000--Sobic007G183900 Sobic005G128400 Sobic005G128400 Sobic005G220000--Sobic005G128400 Sobic003G293200 Sobic003G293200 Sobic005G220000--Sobic003G293200 Sobic007G183300 Sobic007G183300 Sobic005G220000--Sobic007G183300 Sobic005G220000--Sobic003G062300 Sobic010G085200 Sobic010G085200 Sobic005G220000--Sobic010G085200 Sobic001G026500 Sobic001G026500 Sobic005G220000--Sobic001G026500 Sobic004G237100--Sobic001G088100 Sobic001G375300 Sobic001G375300 Sobic004G237100--Sobic001G375300 Sobic002G277600 Sobic002G277600 Sobic004G237100--Sobic002G277600 Sobic005G021500 Sobic005G021500 Sobic004G237100--Sobic005G021500 Sobic004G088200 Sobic004G088200 Sobic004G237100--Sobic004G088200 Sobic005G079800 Sobic005G079800 Sobic004G237100--Sobic005G079800 Sobic004G264300 Sobic004G264300 Sobic004G237100--Sobic004G264300 Sobic002G127100 Sobic002G127100 Sobic004G237100--Sobic002G127100 Sobic001G124000 Sobic001G124000 Sobic004G237100--Sobic001G124000 Sobic006G261400 Sobic006G261400 Sobic003G379200--Sobic006G261400 Sobic009G044800 Sobic009G044800 Sobic003G379200--Sobic009G044800 Sobic003G379200--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G379200--Sobic003G360400 Sobic008G083200 Sobic008G083200 Sobic003G379200--Sobic008G083200 Sobic010G000800 Sobic010G000800 Sobic003G379200--Sobic010G000800 Sobic001G354600 Sobic001G354600 Sobic003G379200--Sobic001G354600 Sobic003G363700 Sobic003G363700 Sobic003G379200--Sobic003G363700 Sobic006G174850 Sobic006G174850 Sobic003G379200--Sobic006G174850
Octagon: transcription factors


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