Gene annotation
Transcriptome id Sobic.002G068100.2,Sobic.002G068100.1,Sobic.002G068100.3
Synonym Sb02g005710
Functional annotation aminoacyl-tRNA synthetase, putative, expressed
UniProt A0A1W0W2P4 , C5XCJ0
Pfam PF02791 PF00010
Panther DB PTHR14296
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18950 : DDT domain superfamily
RAP-DB (Rice) LOC_Os07g09580.1 : aminoacyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a016027 , Zm00025a016029 , Zm00025a018795 , Zm00025a045301 , Zm00025a008607
Brachypodium KQK20457 , KQK12638
Barley HORVU2Hr1G051810.9 , HORVU2Hr1G051810.8 , HORVU2Hr1G051810.1 , HORVU2Hr1G051810.3 , HORVU2Hr1G051810.2 , HORVU2Hr1G051810.5 , HORVU2Hr1G051810.7 , HORVU2Hr1G051810.6 , HORVU2Hr1G051810.10 , HORVU2Hr1G051850.5 , HORVU2Hr1G051850.4 , HORVU2Hr1G051850.7 , HORVU2Hr1G051850.6 , HORVU2Hr1G051850.1 , HORVU2Hr1G051850.3 , HORVU2Hr1G051850.2
Wheat TraesCS2A02G234400 , TraesCS5B02G457600 , TraesCS2D02G237700 , TraesCS2A02G234400 , TraesCS2A02G234400 , TraesCS2D02G237700 , TraesCS2B02G261700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G111600 expressed protein -
2 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
3 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
4 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
5 Sobic.004G158400 AML1, putative, expressed -
6 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
7 Sobic.002G154000 EDM2, putative, expressed -
8 Sobic.002G137200 ZOS9-21 - C2H2 zinc finger protein, expressed -
9 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
10 Sobic.002G313400 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12815: DHX38, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16
11 Sobic.003G012100 smr domain containing protein, expressed -
12 Sobic.004G351600 expressed protein K18734: protein SMG8
13 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
14 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
15 Sobic.003G293200 plus-3 domain containing protein, expressed -
16 Sobic.003G416700 homeobox domain containing protein, expressed -
17 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
18 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
19 Sobic.008G002500 RCD1, putative, expressed -
20 Sobic.010G069100 expressed protein -


Gene co-expression network
sample Sobic002G068100 Sobic002G068100 Sobic001G111600 Sobic001G111600 Sobic002G068100--Sobic001G111600 Sobic001G354600 Sobic001G354600 Sobic002G068100--Sobic001G354600 Sobic003G360400 Sobic003G360400 Sobic002G068100--Sobic003G360400 Sobic004G096400 Sobic004G096400 Sobic002G068100--Sobic004G096400 Sobic004G158400 Sobic004G158400 Sobic002G068100--Sobic004G158400 Sobic006G240100 Sobic006G240100 Sobic002G068100--Sobic006G240100 Sobic002G154000 Sobic002G154000 Sobic002G068100--Sobic002G154000 Sobic002G137200 Sobic002G137200 Sobic002G068100--Sobic002G137200 Sobic002G299700 Sobic002G299700 Sobic002G068100--Sobic002G299700 Sobic001G111600--Sobic002G068100 Sobic003G293200 Sobic003G293200 Sobic001G111600--Sobic003G293200 Sobic005G128400 Sobic005G128400 Sobic001G111600--Sobic005G128400 Sobic001G111600--Sobic001G354600 Sobic001G457900 Sobic001G457900 Sobic001G111600--Sobic001G457900 Sobic010G112100 Sobic010G112100 Sobic001G111600--Sobic010G112100 Sobic010G275500 Sobic010G275500 Sobic001G111600--Sobic010G275500 Sobic005G220000 Sobic005G220000 Sobic001G111600--Sobic005G220000 Sobic002G362800 Sobic002G362800 Sobic001G111600--Sobic002G362800 Sobic001G354600--Sobic003G360400 Sobic001G354600--Sobic010G112100 Sobic001G433800 Sobic001G433800 Sobic001G354600--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic001G354600--Sobic004G048800 Sobic007G105100 Sobic007G105100 Sobic001G354600--Sobic007G105100 Sobic002G133300 Sobic002G133300 Sobic001G354600--Sobic002G133300 Sobic001G063700 Sobic001G063700 Sobic001G354600--Sobic001G063700 Sobic001G354600--Sobic002G068100 Sobic009G044800 Sobic009G044800 Sobic001G354600--Sobic009G044800 Sobic003G360400--Sobic010G112100 Sobic003G360400--Sobic002G154000 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic006G234700 Sobic006G234700 Sobic004G096400--Sobic006G234700 Sobic009G192300 Sobic009G192300 Sobic004G096400--Sobic009G192300 Sobic010G059500 Sobic010G059500 Sobic004G096400--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic004G096400--Sobic001G493200 Sobic009G084900 Sobic009G084900 Sobic004G096400--Sobic009G084900 Sobic004G096400--Sobic001G433800 Sobic003G249600 Sobic003G249600 Sobic004G096400--Sobic003G249600 Sobic006G077200 Sobic006G077200 Sobic004G096400--Sobic006G077200 Sobic007G132100 Sobic007G132100 Sobic004G096400--Sobic007G132100 Sobic007G159900 Sobic007G159900 Sobic004G158400--Sobic007G159900 Sobic005G167700 Sobic005G167700 Sobic004G158400--Sobic005G167700 Sobic001G261492 Sobic001G261492 Sobic004G158400--Sobic001G261492 Sobic004G158400--Sobic003G360400 Sobic004G158400--Sobic007G105100 Sobic004G158400--Sobic010G112100 Sobic004G158400--Sobic001G433800 Sobic004G158400--Sobic005G112300 Sobic003G188400 Sobic003G188400 Sobic004G158400--Sobic003G188400 Sobic006G240100--Sobic009G044800 Sobic003G416700 Sobic003G416700 Sobic006G240100--Sobic003G416700 Sobic006G240100--Sobic002G154000 Sobic006G240100--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic006G240100--Sobic007G218000 Sobic006G240100--Sobic003G360400 Sobic010G204400 Sobic010G204400 Sobic006G240100--Sobic010G204400 Sobic006G240100--Sobic001G354600 Sobic004G072100 Sobic004G072100 Sobic006G240100--Sobic004G072100 Sobic002G154000--Sobic003G360400 Sobic002G154000--Sobic003G416700 Sobic002G154000--Sobic010G112100 Sobic002G154000--Sobic001G063700 Sobic010G001100 Sobic010G001100 Sobic002G154000--Sobic010G001100 Sobic001G461400 Sobic001G461400 Sobic002G154000--Sobic001G461400 Sobic002G154000--Sobic001G433800 Sobic002G154000--Sobic004G048800 Sobic002G154000--Sobic007G063000 Sobic009G088000 Sobic009G088000 Sobic002G137200--Sobic009G088000 Sobic002G137200--Sobic001G354600 Sobic008G002500 Sobic008G002500 Sobic002G137200--Sobic008G002500 Sobic002G137200--Sobic002G068100 Sobic001G522600 Sobic001G522600 Sobic002G137200--Sobic001G522600 Sobic002G137200--Sobic004G048800 Sobic010G278800 Sobic010G278800 Sobic002G137200--Sobic010G278800 Sobic002G126300 Sobic002G126300 Sobic002G137200--Sobic002G126300 Sobic007G146100 Sobic007G146100 Sobic002G137200--Sobic007G146100 Sobic010G116600 Sobic010G116600 Sobic002G299700--Sobic010G116600 Sobic001G363500 Sobic001G363500 Sobic002G299700--Sobic001G363500 Sobic002G299700--Sobic005G112300 Sobic002G397500 Sobic002G397500 Sobic002G299700--Sobic002G397500 Sobic002G299700--Sobic004G048800 Sobic004G242400 Sobic004G242400 Sobic002G299700--Sobic004G242400 Sobic002G299700--Sobic007G105100 Sobic003G408600 Sobic003G408600 Sobic002G299700--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G299700--Sobic007G062800
Octagon: transcription factors


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