Gene annotation
Transcriptome id Sobic.003G012100.1,Sobic.003G012100.2
Synonym Sb03g001230
Functional annotation smr domain containing protein, expressed
UniProt A0A1W0VVC2 , C5XKB2
Pfam PF08590
Panther DB PTHR13308 PTHR13308:SF22 PTHR13308:SF22 PTHR13308
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58720 : silencing defective 5,smr (Small MutS Related) domain-containing protein
RAP-DB (Rice) LOC_Os01g12530.1 : smr domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022851 , Zm00025a023702 , Zm00025a027911 , Zm00025a038418 , Zm00025a002283 , Zm00025a039715 , Zm00025a038357
Brachypodium -
Barley HORVU3Hr1G030600.23 , HORVU3Hr1G030600.22 , HORVU3Hr1G030600.21 , HORVU3Hr1G030600.20 , HORVU3Hr1G030600.26 , HORVU3Hr1G030600.8 , HORVU3Hr1G030600.9 , HORVU3Hr1G030600.2 , HORVU3Hr1G030600.4 , HORVU3Hr1G030600.5 , HORVU3Hr1G030600.6 , HORVU3Hr1G030600.7 , HORVU3Hr1G030600.25 , HORVU3Hr1G030600.24 , HORVU3Hr1G030600.13 , HORVU3Hr1G030600.16 , HORVU3Hr1G030600.14 , HORVU3Hr1G030600.18 , HORVU3Hr1G030600.19
Wheat -
Populus -


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cDNA sequences
Sobic.003G012100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
2 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
3 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
4 Sobic.008G113100 protein binding protein, putative, expressed -
5 Sobic.001G363500 DIRP family protein, putative, expressed -
6 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
7 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
8 Sobic.007G117400 expressed protein -
9 Sobic.001G241200 protein kinase domain containing protein, expressed -
10 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
11 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
12 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
13 Sobic.010G069100 expressed protein -
14 Sobic.002G154000 EDM2, putative, expressed -
15 Sobic.003G372700 expressed protein -
16 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
17 Sobic.001G083400 expressed protein -
18 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
19 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
20 Sobic.003G059750 - K11797: PHIP, PH-interacting protein


Gene co-expression network
sample Sobic003G012100 Sobic003G012100 Sobic004G048800 Sobic004G048800 Sobic003G012100--Sobic004G048800 Sobic002G299700 Sobic002G299700 Sobic003G012100--Sobic002G299700 Sobic003G360400 Sobic003G360400 Sobic003G012100--Sobic003G360400 Sobic008G113100 Sobic008G113100 Sobic003G012100--Sobic008G113100 Sobic001G363500 Sobic001G363500 Sobic003G012100--Sobic001G363500 Sobic001G026200 Sobic001G026200 Sobic003G012100--Sobic001G026200 Sobic010G065300 Sobic010G065300 Sobic003G012100--Sobic010G065300 Sobic007G117400 Sobic007G117400 Sobic003G012100--Sobic007G117400 Sobic001G241200 Sobic001G241200 Sobic003G012100--Sobic001G241200 Sobic008G098300 Sobic008G098300 Sobic004G048800--Sobic008G098300 Sobic001G398800 Sobic001G398800 Sobic004G048800--Sobic001G398800 Sobic004G242400 Sobic004G242400 Sobic004G048800--Sobic004G242400 Sobic010G001100 Sobic010G001100 Sobic004G048800--Sobic010G001100 Sobic004G048800--Sobic003G360400 Sobic004G048800--Sobic001G363500 Sobic002G317200 Sobic002G317200 Sobic004G048800--Sobic002G317200 Sobic001G433800 Sobic001G433800 Sobic004G048800--Sobic001G433800 Sobic005G112300 Sobic005G112300 Sobic004G048800--Sobic005G112300 Sobic010G116600 Sobic010G116600 Sobic002G299700--Sobic010G116600 Sobic002G299700--Sobic001G363500 Sobic002G299700--Sobic005G112300 Sobic002G397500 Sobic002G397500 Sobic002G299700--Sobic002G397500 Sobic002G299700--Sobic004G048800 Sobic002G299700--Sobic004G242400 Sobic007G105100 Sobic007G105100 Sobic002G299700--Sobic007G105100 Sobic003G408600 Sobic003G408600 Sobic002G299700--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G299700--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic004G258700 Sobic004G258700 Sobic008G113100--Sobic004G258700 Sobic008G028700 Sobic008G028700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic007G065400 Sobic007G065400 Sobic008G113100--Sobic007G065400 Sobic001G456900 Sobic001G456900 Sobic008G113100--Sobic001G456900 Sobic009G024000 Sobic009G024000 Sobic008G113100--Sobic009G024000 Sobic009G040600 Sobic009G040600 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic004G039200 Sobic004G039200 Sobic008G113100--Sobic004G039200 Sobic001G363500--Sobic005G112300 Sobic001G363500--Sobic007G062800 Sobic010G247800 Sobic010G247800 Sobic001G363500--Sobic010G247800 Sobic001G363500--Sobic002G299700 Sobic001G363500--Sobic010G112100 Sobic001G363500--Sobic004G242400 Sobic001G363500--Sobic001G433800 Sobic010G279450 Sobic010G279450 Sobic001G363500--Sobic010G279450 Sobic010G139000 Sobic010G139000 Sobic001G363500--Sobic010G139000 Sobic002G071500 Sobic002G071500 Sobic001G026200--Sobic002G071500 Sobic001G026200--Sobic010G116600 Sobic002G153700 Sobic002G153700 Sobic001G026200--Sobic002G153700 Sobic010G236400 Sobic010G236400 Sobic001G026200--Sobic010G236400 Sobic001G026200--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic001G026200--Sobic009G119000 Sobic001G026200--Sobic001G398800 Sobic003G119000 Sobic003G119000 Sobic001G026200--Sobic003G119000 Sobic001G026200--Sobic009G044800 Sobic010G065300--Sobic010G001100 Sobic008G009700 Sobic008G009700 Sobic010G065300--Sobic008G009700 Sobic010G065300--Sobic002G153700 Sobic001G306900 Sobic001G306900 Sobic010G065300--Sobic001G306900 Sobic001G134300 Sobic001G134300 Sobic010G065300--Sobic001G134300 Sobic003G293200 Sobic003G293200 Sobic010G065300--Sobic003G293200 Sobic010G065300--Sobic009G119000 Sobic004G156500 Sobic004G156500 Sobic010G065300--Sobic004G156500 Sobic010G065300--Sobic004G048800 Sobic002G309600 Sobic002G309600 Sobic007G117400--Sobic002G309600 Sobic007G117400--Sobic001G241200 Sobic004G065100 Sobic004G065100 Sobic007G117400--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic007G117400--Sobic007G161000 Sobic003G280800 Sobic003G280800 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic001G154900 Sobic001G154900 Sobic007G117400--Sobic001G154900 Sobic007G117400--Sobic009G040600 Sobic005G008800 Sobic005G008800 Sobic007G117400--Sobic005G008800 Sobic001G241200--Sobic007G117400 Sobic001G241200--Sobic005G112300 Sobic001G241200--Sobic004G065100 Sobic001G241200--Sobic002G309600 Sobic001G241200--Sobic005G008800 Sobic001G241200--Sobic008G009700 Sobic001G241200--Sobic001G154900 Sobic001G241200--Sobic003G119000 Sobic001G540400 Sobic001G540400 Sobic001G241200--Sobic001G540400
Octagon: transcription factors


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