Gene annotation
Transcriptome id Sobic.004G351600.2,Sobic.004G351600.5,Sobic.004G351600.3,Sobic.004G351600.4,Sobic.004G351600.6,Sobic.004G351600.1
Synonym Sb04g037840
Functional annotation expressed protein
UniProt A0A1Z5RQG9 , C5XW19 , C5XWK9 , A0A1Z5RQN2 , A0A1Z5RQZ9 , A0A1Z5RQN5
Pfam PF10220
Panther DB PTHR13091 PTHR13091:SF0
NCBI CDD -
KEGG Orthology K18734; protein SMG8
Gene Ontology GO:0000184; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os02g57780.2 : expressed protein
MaizeGDB (Corn) Zm00025a032743
Brachypodium KQK01448 , KQK01449
Barley HORVU6Hr1G092870.6 , HORVU6Hr1G092870.7 , HORVU6Hr1G092870.4 , HORVU6Hr1G092870.5 , HORVU6Hr1G092870.2 , HORVU6Hr1G092870.3 , HORVU6Hr1G092870.1
Wheat TraesCS6A02G404800 , TraesCS6D02G388100 , TraesCS6D02G388100 , TraesCS6B02G449100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
2 Sobic.007G063000 expressed protein -
3 Sobic.003G166750 - K15188: cyclin T
4 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
5 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
6 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
7 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
8 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
9 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
10 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
11 Sobic.007G062800 SET domain containing protein, expressed -
12 Sobic.001G111850 - -
13 Sobic.007G146100 formin, putative, expressed -
14 Sobic.003G196300 DNA binding protein, putative, expressed -
15 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
16 Sobic.002G429300 importin subunit beta, putative, expressed -
17 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
18 Sobic.001G161800 F-box/LRR domain containing protein, putative, expressed -
19 Sobic.001G536400 THO complex subunit 1, putative, expressed K12878: THO complex subunit 1
20 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase


Gene co-expression network
sample Sobic004G351600 Sobic004G351600 Sobic009G256400 Sobic009G256400 Sobic004G351600--Sobic009G256400 Sobic007G063000 Sobic007G063000 Sobic004G351600--Sobic007G063000 Sobic003G166750 Sobic003G166750 Sobic004G351600--Sobic003G166750 Sobic002G042600 Sobic002G042600 Sobic004G351600--Sobic002G042600 Sobic003G095900 Sobic003G095900 Sobic004G351600--Sobic003G095900 Sobic004G276400 Sobic004G276400 Sobic004G351600--Sobic004G276400 Sobic002G133300 Sobic002G133300 Sobic004G351600--Sobic002G133300 Sobic009G165700 Sobic009G165700 Sobic004G351600--Sobic009G165700 Sobic001G370900 Sobic001G370900 Sobic004G351600--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic009G256400--Sobic001G457800 Sobic008G001200 Sobic008G001200 Sobic009G256400--Sobic008G001200 Sobic009G256400--Sobic001G370900 Sobic004G291900 Sobic004G291900 Sobic009G256400--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic009G256400--Sobic005G001000 Sobic009G256400--Sobic003G166750 Sobic001G194200 Sobic001G194200 Sobic009G256400--Sobic001G194200 Sobic009G256400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic009G256400--Sobic010G010700 Sobic001G433800 Sobic001G433800 Sobic007G063000--Sobic001G433800 Sobic003G196300 Sobic003G196300 Sobic007G063000--Sobic003G196300 Sobic003G360400 Sobic003G360400 Sobic007G063000--Sobic003G360400 Sobic009G109200 Sobic009G109200 Sobic007G063000--Sobic009G109200 Sobic007G063000--Sobic009G165700 Sobic010G112100 Sobic010G112100 Sobic007G063000--Sobic010G112100 Sobic007G063000--Sobic003G166750 Sobic004G242400 Sobic004G242400 Sobic007G063000--Sobic004G242400 Sobic009G256300 Sobic009G256300 Sobic007G063000--Sobic009G256300 Sobic003G166750--Sobic009G165700 Sobic003G166750--Sobic008G001200 Sobic003G166750--Sobic009G256400 Sobic003G166750--Sobic001G370900 Sobic001G289800 Sobic001G289800 Sobic003G166750--Sobic001G289800 Sobic002G316600 Sobic002G316600 Sobic003G166750--Sobic002G316600 Sobic003G166750--Sobic001G194200 Sobic001G527800 Sobic001G527800 Sobic003G166750--Sobic001G527800 Sobic003G166750--Sobic001G457800 Sobic001G065100 Sobic001G065100 Sobic002G042600--Sobic001G065100 Sobic006G184900 Sobic006G184900 Sobic002G042600--Sobic006G184900 Sobic008G098900 Sobic008G098900 Sobic002G042600--Sobic008G098900 Sobic002G401500 Sobic002G401500 Sobic002G042600--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic002G042600--Sobic002G179400 Sobic004G322400 Sobic004G322400 Sobic002G042600--Sobic004G322400 Sobic002G429300 Sobic002G429300 Sobic002G042600--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic002G042600--Sobic008G088872 Sobic002G042600--Sobic001G370900 Sobic003G095900--Sobic004G242400 Sobic003G095900--Sobic001G433800 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G095900--Sobic003G360400 Sobic003G095900--Sobic009G256400 Sobic003G095900--Sobic004G276400 Sobic003G095900--Sobic001G289800 Sobic003G186000 Sobic003G186000 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G034900 Sobic004G034900 Sobic004G276400--Sobic004G034900 Sobic007G062800 Sobic007G062800 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700 Sobic003G422500 Sobic003G422500 Sobic009G165700--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic009G165700--Sobic010G247800 Sobic010G206900 Sobic010G206900 Sobic009G165700--Sobic010G206900 Sobic009G165700--Sobic003G166750 Sobic008G087866 Sobic008G087866 Sobic009G165700--Sobic008G087866 Sobic001G451400 Sobic001G451400 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic001G534700 Sobic001G534700 Sobic009G165700--Sobic001G534700 Sobic009G165700--Sobic008G001200 Sobic001G370900--Sobic008G098900 Sobic001G370900--Sobic005G001000 Sobic001G370900--Sobic009G256400 Sobic002G146300 Sobic002G146300 Sobic001G370900--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic001G370900--Sobic003G205200 Sobic001G370900--Sobic001G194200 Sobic001G370900--Sobic004G276400 Sobic001G370900--Sobic008G001200 Sobic001G370900--Sobic001G457800
Octagon: transcription factors


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