Gene annotation
Transcriptome id Sobic.009G126300.1
Synonym Sb09g019370, KEG
Functional annotation RING E3 ligase protein, putative, expressed
UniProt A0A1B6P8P3
Pfam PF00097 PF07714 PF12796
Panther DB PTHR22967 PTHR22967:SF69
NCBI CDD KOG0198; MEKK and related serine/threonine protein kinases
KEGG Orthology K16279; E3 ubiquitin-protein ligase KEG
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G13530 : protein kinases;ubiquitin-protein ligases
RAP-DB (Rice) LOC_Os05g32570.1 : RING E3 ligase protein, putative, expressed
MaizeGDB (Corn) Zm00025a037618 , Zm00025a043578
Brachypodium KQK06478
Barley HORVU1Hr1G063030.1 , HORVU1Hr1G063030.3 , HORVU1Hr1G063030.2 , HORVU1Hr1G063030.5 , HORVU1Hr1G063030.4 , HORVU1Hr1G063030.7 , HORVU1Hr1G063030.6 , HORVU7Hr1G076440.2 , HORVU7Hr1G076440.3 , HORVU7Hr1G076440.1
Wheat TraesCS1D02G244900 , TraesCS1D02G244900 , TraesCS1B02G256200 , TraesCS1B02G256200 , TraesCS1A02G245000 , TraesCS1A02G245000 , TraesCS1A02G245000
Populus -


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cDNA sequences
Sobic.009G126300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
2 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
3 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
4 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
5 Sobic.002G179400 DNA binding protein, putative, expressed -
6 Sobic.004G088501 - K17302: COPB2, coatomer subunit beta'
7 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
8 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
9 Sobic.002G388500 SART-1 family protein, putative, expressed K11984: SART1, HAF, U4/U6.U5 tri-snRNP-associated protein 1
10 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
11 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
12 Sobic.001G400500 calpain, putative, expressed -
13 Sobic.003G293200 plus-3 domain containing protein, expressed -
14 Sobic.010G275500 EF hand family protein, putative, expressed -
15 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
16 Sobic.001G457900 expressed protein -
17 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
18 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
19 Sobic.010G001100 chromo domain containing protein, expressed -
20 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein


Gene co-expression network
sample Sobic009G126300 Sobic009G126300 Sobic009G182600 Sobic009G182600 Sobic009G126300--Sobic009G182600 Sobic001G493700 Sobic001G493700 Sobic009G126300--Sobic001G493700 Sobic007G168300 Sobic007G168300 Sobic009G126300--Sobic007G168300 Sobic001G137000 Sobic001G137000 Sobic009G126300--Sobic001G137000 Sobic002G179400 Sobic002G179400 Sobic009G126300--Sobic002G179400 Sobic004G088501 Sobic004G088501 Sobic009G126300--Sobic004G088501 Sobic009G255600 Sobic009G255600 Sobic009G126300--Sobic009G255600 Sobic001G117200 Sobic001G117200 Sobic009G126300--Sobic001G117200 Sobic002G388500 Sobic002G388500 Sobic009G126300--Sobic002G388500 Sobic009G182600--Sobic009G126300 Sobic009G182600--Sobic002G179400 Sobic009G182600--Sobic001G493700 Sobic004G040500 Sobic004G040500 Sobic009G182600--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic009G182600--Sobic004G204100 Sobic002G164200 Sobic002G164200 Sobic009G182600--Sobic002G164200 Sobic009G182600--Sobic009G255600 Sobic009G182600--Sobic001G137000 Sobic008G033900 Sobic008G033900 Sobic009G182600--Sobic008G033900 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic002G133300 Sobic002G133300 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic003G042400 Sobic003G042400 Sobic007G168300--Sobic003G042400 Sobic005G200800 Sobic005G200800 Sobic007G168300--Sobic005G200800 Sobic010G001100 Sobic010G001100 Sobic007G168300--Sobic010G001100 Sobic002G154000 Sobic002G154000 Sobic007G168300--Sobic002G154000 Sobic007G168300--Sobic009G126300 Sobic007G183300 Sobic007G183300 Sobic007G168300--Sobic007G183300 Sobic001G453000 Sobic001G453000 Sobic007G168300--Sobic001G453000 Sobic001G376900 Sobic001G376900 Sobic007G168300--Sobic001G376900 Sobic005G200900 Sobic005G200900 Sobic007G168300--Sobic005G200900 Sobic008G092600 Sobic008G092600 Sobic001G137000--Sobic008G092600 Sobic007G098500 Sobic007G098500 Sobic001G137000--Sobic007G098500 Sobic003G233400 Sobic003G233400 Sobic001G137000--Sobic003G233400 Sobic003G312100 Sobic003G312100 Sobic001G137000--Sobic003G312100 Sobic001G137000--Sobic001G117200 Sobic002G396500 Sobic002G396500 Sobic001G137000--Sobic002G396500 Sobic001G050600 Sobic001G050600 Sobic001G137000--Sobic001G050600 Sobic008G098900 Sobic008G098900 Sobic001G137000--Sobic008G098900 Sobic008G099800 Sobic008G099800 Sobic001G137000--Sobic008G099800 Sobic002G179400--Sobic001G493700 Sobic002G179400--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G179400--Sobic004G053500 Sobic002G179400--Sobic002G429300 Sobic002G179400--Sobic006G184900 Sobic002G179400--Sobic003G233400 Sobic002G179400--Sobic002G133300 Sobic001G065100 Sobic001G065100 Sobic002G179400--Sobic001G065100 Sobic004G322400 Sobic004G322400 Sobic002G179400--Sobic004G322400 Sobic004G088450 Sobic004G088450 Sobic004G088501--Sobic004G088450 Sobic004G088501--Sobic009G126300 Sobic003G337300 Sobic003G337300 Sobic004G088501--Sobic003G337300 Sobic004G178300 Sobic004G178300 Sobic004G088501--Sobic004G178300 Sobic006G034500 Sobic006G034500 Sobic004G088501--Sobic006G034500 Sobic004G088501--Sobic001G493700 Sobic006G131000 Sobic006G131000 Sobic004G088501--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic004G088501--Sobic001G281100 Sobic004G088501--Sobic004G322400 Sobic010G186600 Sobic010G186600 Sobic009G255600--Sobic010G186600 Sobic003G416700 Sobic003G416700 Sobic009G255600--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic009G255600--Sobic003G214600 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic002G029100 Sobic002G029100 Sobic009G255600--Sobic002G029100 Sobic009G255600--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic009G255600--Sobic001G291800 Sobic003G360400 Sobic003G360400 Sobic009G255600--Sobic003G360400 Sobic001G117200--Sobic008G098900 Sobic003G408600 Sobic003G408600 Sobic001G117200--Sobic003G408600 Sobic002G430000 Sobic002G430000 Sobic001G117200--Sobic002G430000 Sobic001G540400 Sobic001G540400 Sobic001G117200--Sobic001G540400 Sobic001G117200--Sobic001G137000 Sobic004G113400 Sobic004G113400 Sobic001G117200--Sobic004G113400 Sobic001G542500 Sobic001G542500 Sobic001G117200--Sobic001G542500 Sobic001G058700 Sobic001G058700 Sobic001G117200--Sobic001G058700 Sobic001G117200--Sobic008G092600 Sobic002G388500--Sobic009G126300 Sobic002G388500--Sobic009G182600 Sobic010G078900 Sobic010G078900 Sobic002G388500--Sobic010G078900 Sobic003G252100 Sobic003G252100 Sobic002G388500--Sobic003G252100 Sobic008G011000 Sobic008G011000 Sobic002G388500--Sobic008G011000 Sobic002G388500--Sobic001G493700 Sobic004G223000 Sobic004G223000 Sobic002G388500--Sobic004G223000 Sobic002G388500--Sobic004G088501 Sobic001G230000 Sobic001G230000 Sobic002G388500--Sobic001G230000
Octagon: transcription factors


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