Gene annotation
Transcriptome id Sobic.002G388500.2
Synonym MDF, DOT2
Functional annotation SART-1 family protein, putative, expressed
UniProt A0A1W0W7F3
Pfam PF03343
Panther DB PTHR14152 PTHR14152:SF5
NCBI CDD KOG2217; U4/U6.U5 snRNP associated protein
KEGG Orthology K11984; SART1, HAF, U4/U6.U5 tri-snRNP-associated protein 1
Gene Ontology GO:0000398; mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT5G16780 : SART-1 family
RAP-DB (Rice) LOC_Os02g30730.2 : SART-1 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a025942
Brachypodium KQJ84640 , KQK02064 , PNT73907 , PNT73908 , KQK02065 , KQK12483
Barley HORVU2Hr1G123070.9 , HORVU2Hr1G123070.8 , HORVU2Hr1G123070.1 , HORVU2Hr1G123070.3 , HORVU2Hr1G123070.2 , HORVU2Hr1G123070.5 , HORVU2Hr1G123070.4 , HORVU2Hr1G123070.7 , HORVU2Hr1G123070.6 , HORVU2Hr1G123070.11 , HORVU2Hr1G123070.20 , HORVU2Hr1G123070.21 , HORVU2Hr1G123070.22 , HORVU2Hr1G123070.24 , HORVU2Hr1G123070.19 , HORVU2Hr1G123070.18 , HORVU2Hr1G123070.15 , HORVU2Hr1G123070.14 , HORVU2Hr1G123070.17 , HORVU2Hr1G123070.16 , HORVU2Hr1G123070.10 , HORVU2Hr1G123070.13 , HORVU2Hr1G123070.12 , HORVU2Hr1G123070.25
Wheat TraesCSU02G036700 , TraesCS2B02G599600 , TraesCS2D02G594300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
2 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
3 Sobic.010G078900 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
4 Sobic.003G252100 DDT, putative, expressed -
5 Sobic.008G011000 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
6 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
7 Sobic.004G223000 MIF4G domain containing protein, putative, expressed K14327: UPF2, regulator of nonsense transcripts 2
8 Sobic.004G088501 - K17302: COPB2, coatomer subunit beta'
9 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
10 Sobic.007G004000 YL1 nuclear protein C-terminal domain containing protein, expressed K11664: VPS72, TCFL1, vacuolar protein sorting-associated protein 72
11 Sobic.001G503900 MT-A70 domain containing protein, expressed -
12 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
13 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
14 Sobic.002G344000 expressed protein -
15 Sobic.002G213300 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
16 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
17 Sobic.002G127100 RNA-binding protein Luc7-like, putative, expressed -
18 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
19 Sobic.007G009700 nucleic acid binding protein, putative, expressed K12839: SMNDC1, survival of motor neuron-related-splicing factor 30
20 Sobic.010G169600 OsCML2 - Calmodulin-related calcium sensor protein, expressed -


Gene co-expression network
sample Sobic002G388500 Sobic002G388500 Sobic009G126300 Sobic009G126300 Sobic002G388500--Sobic009G126300 Sobic009G182600 Sobic009G182600 Sobic002G388500--Sobic009G182600 Sobic010G078900 Sobic010G078900 Sobic002G388500--Sobic010G078900 Sobic003G252100 Sobic003G252100 Sobic002G388500--Sobic003G252100 Sobic008G011000 Sobic008G011000 Sobic002G388500--Sobic008G011000 Sobic001G493700 Sobic001G493700 Sobic002G388500--Sobic001G493700 Sobic004G223000 Sobic004G223000 Sobic002G388500--Sobic004G223000 Sobic004G088501 Sobic004G088501 Sobic002G388500--Sobic004G088501 Sobic001G230000 Sobic001G230000 Sobic002G388500--Sobic001G230000 Sobic009G126300--Sobic009G182600 Sobic009G126300--Sobic001G493700 Sobic007G168300 Sobic007G168300 Sobic009G126300--Sobic007G168300 Sobic001G137000 Sobic001G137000 Sobic009G126300--Sobic001G137000 Sobic002G179400 Sobic002G179400 Sobic009G126300--Sobic002G179400 Sobic009G126300--Sobic004G088501 Sobic009G255600 Sobic009G255600 Sobic009G126300--Sobic009G255600 Sobic001G117200 Sobic001G117200 Sobic009G126300--Sobic001G117200 Sobic009G126300--Sobic002G388500 Sobic009G182600--Sobic009G126300 Sobic009G182600--Sobic002G179400 Sobic009G182600--Sobic001G493700 Sobic004G040500 Sobic004G040500 Sobic009G182600--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic009G182600--Sobic004G204100 Sobic002G164200 Sobic002G164200 Sobic009G182600--Sobic002G164200 Sobic009G182600--Sobic009G255600 Sobic009G182600--Sobic001G137000 Sobic008G033900 Sobic008G033900 Sobic009G182600--Sobic008G033900 Sobic007G212300 Sobic007G212300 Sobic010G078900--Sobic007G212300 Sobic004G246900 Sobic004G246900 Sobic010G078900--Sobic004G246900 Sobic001G227400 Sobic001G227400 Sobic010G078900--Sobic001G227400 Sobic001G154900 Sobic001G154900 Sobic010G078900--Sobic001G154900 Sobic010G078900--Sobic009G126300 Sobic003G194500 Sobic003G194500 Sobic010G078900--Sobic003G194500 Sobic001G261501 Sobic001G261501 Sobic010G078900--Sobic001G261501 Sobic001G088100 Sobic001G088100 Sobic010G078900--Sobic001G088100 Sobic001G431000 Sobic001G431000 Sobic010G078900--Sobic001G431000 Sobic004G314000 Sobic004G314000 Sobic003G252100--Sobic004G314000 Sobic004G065100 Sobic004G065100 Sobic003G252100--Sobic004G065100 Sobic003G401600 Sobic003G401600 Sobic003G252100--Sobic003G401600 Sobic002G299700 Sobic002G299700 Sobic003G252100--Sobic002G299700 Sobic004G023000 Sobic004G023000 Sobic003G252100--Sobic004G023000 Sobic005G008800 Sobic005G008800 Sobic003G252100--Sobic005G008800 Sobic004G242400 Sobic004G242400 Sobic003G252100--Sobic004G242400 Sobic002G211800 Sobic002G211800 Sobic003G252100--Sobic002G211800 Sobic010G139000 Sobic010G139000 Sobic003G252100--Sobic010G139000 Sobic001G503900 Sobic001G503900 Sobic008G011000--Sobic001G503900 Sobic002G316600 Sobic002G316600 Sobic008G011000--Sobic002G316600 Sobic008G044100 Sobic008G044100 Sobic008G011000--Sobic008G044100 Sobic001G072500 Sobic001G072500 Sobic008G011000--Sobic001G072500 Sobic008G011000--Sobic004G314000 Sobic008G011000--Sobic007G212300 Sobic003G260400 Sobic003G260400 Sobic008G011000--Sobic003G260400 Sobic002G127550 Sobic002G127550 Sobic008G011000--Sobic002G127550 Sobic008G011000--Sobic001G230000 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic002G133300 Sobic002G133300 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic004G223000--Sobic001G230000 Sobic010G206900 Sobic010G206900 Sobic004G223000--Sobic010G206900 Sobic003G186000 Sobic003G186000 Sobic004G223000--Sobic003G186000 Sobic004G223000--Sobic002G316600 Sobic001G527800 Sobic001G527800 Sobic004G223000--Sobic001G527800 Sobic007G062800 Sobic007G062800 Sobic004G223000--Sobic007G062800 Sobic004G276400 Sobic004G276400 Sobic004G223000--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic004G223000--Sobic010G010700 Sobic001G370900 Sobic001G370900 Sobic004G223000--Sobic001G370900 Sobic004G088450 Sobic004G088450 Sobic004G088501--Sobic004G088450 Sobic004G088501--Sobic009G126300 Sobic003G337300 Sobic003G337300 Sobic004G088501--Sobic003G337300 Sobic004G178300 Sobic004G178300 Sobic004G088501--Sobic004G178300 Sobic006G034500 Sobic006G034500 Sobic004G088501--Sobic006G034500 Sobic004G088501--Sobic001G493700 Sobic006G131000 Sobic006G131000 Sobic004G088501--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic004G088501--Sobic001G281100 Sobic004G322400 Sobic004G322400 Sobic004G088501--Sobic004G322400 Sobic001G230000--Sobic010G206900 Sobic003G155100 Sobic003G155100 Sobic001G230000--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G230000--Sobic008G001200 Sobic001G230000--Sobic004G276400 Sobic001G230000--Sobic004G223000 Sobic009G256300 Sobic009G256300 Sobic001G230000--Sobic009G256300 Sobic001G230000--Sobic010G010700 Sobic001G298900 Sobic001G298900 Sobic001G230000--Sobic001G298900 Sobic001G230000--Sobic008G044100
Octagon: transcription factors


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