Gene annotation
Transcriptome id Sobic.010G078900.1
Synonym GTA2, Sb10g006840, GTA02
Functional annotation transcription elongation factor SPT5 homolog 1, putative, expressed
UniProt C5Z6E1
Pfam PF11942 PF00467 PF03439
Panther DB PTHR11125
NCBI CDD -
KEGG Orthology K15172; SUPT5H, transcription elongation factor SPT5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G08350 : global transcription factor group A2
RAP-DB (Rice) LOC_Os06g10620.1 : transcription elongation factor SPT5 homolog 1, putative, expressed
MaizeGDB (Corn) Zm00025a049607 , Zm00025a042488
Brachypodium KQK19065
Barley HORVU7Hr1G035280.7 , HORVU7Hr1G035280.6 , HORVU7Hr1G035280.5 , HORVU7Hr1G035280.4 , HORVU7Hr1G035280.3 , HORVU7Hr1G035280.2 , HORVU7Hr1G035280.1 , HORVU7Hr1G035280.9 , HORVU7Hr1G035280.8 , HORVU7Hr1G035280.17 , HORVU7Hr1G035280.16 , HORVU7Hr1G035280.15 , HORVU7Hr1G035280.14 , HORVU7Hr1G035280.13 , HORVU7Hr1G035280.12 , HORVU7Hr1G035280.11 , HORVU7Hr1G035280.10
Wheat TraesCS7B02G073100 , TraesCS7A02G168300 , TraesCS7A02G168300 , TraesCS7D02G169200
Populus -


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cDNA sequences
Sobic.010G078900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
2 Sobic.004G246900 ankyrin repeat-containing protein, putative, expressed -
3 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
5 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
6 Sobic.003G194500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
7 Sobic.001G261501 - -
8 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
9 Sobic.001G431000 Sel1 repeat domain containing protein, putative, expressed K14026: SEL1, SEL1 protein
10 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
11 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
12 Sobic.007G133700 expressed protein -
13 Sobic.010G079900 AT hook-containing DNA-binding protein, putative, expressed -
14 Sobic.001G260400 transcription initiation factor, putative, expressed K03136: TFIIE1, GTF2E1, TFA1, transcription initiation factor TFIIE subunit alpha
15 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
16 Sobic.001G289800 BAH domain containing protein, putative, expressed -
17 Sobic.005G128400 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
18 Sobic.001G102700 metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed K01404: leishmanolysin
19 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
20 Sobic.005G064000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C


Gene co-expression network
sample Sobic010G078900 Sobic010G078900 Sobic007G212300 Sobic007G212300 Sobic010G078900--Sobic007G212300 Sobic004G246900 Sobic004G246900 Sobic010G078900--Sobic004G246900 Sobic001G227400 Sobic001G227400 Sobic010G078900--Sobic001G227400 Sobic001G154900 Sobic001G154900 Sobic010G078900--Sobic001G154900 Sobic009G126300 Sobic009G126300 Sobic010G078900--Sobic009G126300 Sobic003G194500 Sobic003G194500 Sobic010G078900--Sobic003G194500 Sobic001G261501 Sobic001G261501 Sobic010G078900--Sobic001G261501 Sobic001G088100 Sobic001G088100 Sobic010G078900--Sobic001G088100 Sobic001G431000 Sobic001G431000 Sobic010G078900--Sobic001G431000 Sobic007G212300--Sobic003G194500 Sobic004G314000 Sobic004G314000 Sobic007G212300--Sobic004G314000 Sobic005G064000 Sobic005G064000 Sobic007G212300--Sobic005G064000 Sobic003G360400 Sobic003G360400 Sobic007G212300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic007G212300--Sobic003G095900 Sobic007G212300--Sobic001G227400 Sobic007G105100 Sobic007G105100 Sobic007G212300--Sobic007G105100 Sobic005G008800 Sobic005G008800 Sobic007G212300--Sobic005G008800 Sobic007G212300--Sobic001G154900 Sobic004G246900--Sobic010G078900 Sobic001G102700 Sobic001G102700 Sobic004G246900--Sobic001G102700 Sobic002G134600 Sobic002G134600 Sobic004G246900--Sobic002G134600 Sobic001G226700 Sobic001G226700 Sobic004G246900--Sobic001G226700 Sobic010G079900 Sobic010G079900 Sobic004G246900--Sobic010G079900 Sobic004G246900--Sobic001G088100 Sobic002G294800 Sobic002G294800 Sobic004G246900--Sobic002G294800 Sobic010G021500 Sobic010G021500 Sobic004G246900--Sobic010G021500 Sobic005G084400 Sobic005G084400 Sobic004G246900--Sobic005G084400 Sobic009G044800 Sobic009G044800 Sobic001G227400--Sobic009G044800 Sobic007G218000 Sobic007G218000 Sobic001G227400--Sobic007G218000 Sobic001G493200 Sobic001G493200 Sobic001G227400--Sobic001G493200 Sobic001G493700 Sobic001G493700 Sobic001G227400--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G227400--Sobic006G088200 Sobic009G084900 Sobic009G084900 Sobic001G227400--Sobic009G084900 Sobic003G195000 Sobic003G195000 Sobic001G227400--Sobic003G195000 Sobic005G172500 Sobic005G172500 Sobic001G227400--Sobic005G172500 Sobic001G289800 Sobic001G289800 Sobic001G227400--Sobic001G289800 Sobic002G309600 Sobic002G309600 Sobic001G154900--Sobic002G309600 Sobic001G289600 Sobic001G289600 Sobic001G154900--Sobic001G289600 Sobic001G241200 Sobic001G241200 Sobic001G154900--Sobic001G241200 Sobic010G069100 Sobic010G069100 Sobic001G154900--Sobic010G069100 Sobic001G154900--Sobic005G008800 Sobic007G117400 Sobic007G117400 Sobic001G154900--Sobic007G117400 Sobic004G065100 Sobic004G065100 Sobic001G154900--Sobic004G065100 Sobic004G009600 Sobic004G009600 Sobic001G154900--Sobic004G009600 Sobic001G154900--Sobic007G105100 Sobic009G182600 Sobic009G182600 Sobic009G126300--Sobic009G182600 Sobic009G126300--Sobic001G493700 Sobic007G168300 Sobic007G168300 Sobic009G126300--Sobic007G168300 Sobic001G137000 Sobic001G137000 Sobic009G126300--Sobic001G137000 Sobic002G179400 Sobic002G179400 Sobic009G126300--Sobic002G179400 Sobic004G088501 Sobic004G088501 Sobic009G126300--Sobic004G088501 Sobic009G255600 Sobic009G255600 Sobic009G126300--Sobic009G255600 Sobic001G117200 Sobic001G117200 Sobic009G126300--Sobic001G117200 Sobic002G388500 Sobic002G388500 Sobic009G126300--Sobic002G388500 Sobic003G194500--Sobic007G212300 Sobic004G023100 Sobic004G023100 Sobic003G194500--Sobic004G023100 Sobic003G194500--Sobic001G088100 Sobic003G194500--Sobic001G227400 Sobic002G380200 Sobic002G380200 Sobic003G194500--Sobic002G380200 Sobic003G194500--Sobic001G493200 Sobic003G266001 Sobic003G266001 Sobic003G194500--Sobic003G266001 Sobic003G194500--Sobic004G314000 Sobic008G118200 Sobic008G118200 Sobic003G194500--Sobic008G118200 Sobic009G053900 Sobic009G053900 Sobic001G261501--Sobic009G053900 Sobic001G261501--Sobic002G380200 Sobic009G165700 Sobic009G165700 Sobic001G261501--Sobic009G165700 Sobic003G408600 Sobic003G408600 Sobic001G261501--Sobic003G408600 Sobic005G027400 Sobic005G027400 Sobic001G261501--Sobic005G027400 Sobic001G540400 Sobic001G540400 Sobic001G261501--Sobic001G540400 Sobic007G157000 Sobic007G157000 Sobic001G261501--Sobic007G157000 Sobic003G422500 Sobic003G422500 Sobic001G261501--Sobic003G422500 Sobic007G063000 Sobic007G063000 Sobic001G261501--Sobic007G063000 Sobic009G005500 Sobic009G005500 Sobic001G088100--Sobic009G005500 Sobic007G119200 Sobic007G119200 Sobic001G088100--Sobic007G119200 Sobic001G088100--Sobic010G069100 Sobic010G236400 Sobic010G236400 Sobic001G088100--Sobic010G236400 Sobic003G394300 Sobic003G394300 Sobic001G088100--Sobic003G394300 Sobic001G088100--Sobic007G105100 Sobic001G088100--Sobic001G241200 Sobic004G274200 Sobic004G274200 Sobic001G088100--Sobic004G274200 Sobic001G088100--Sobic003G408600 Sobic006G126100 Sobic006G126100 Sobic001G431000--Sobic006G126100 Sobic006G073200 Sobic006G073200 Sobic001G431000--Sobic006G073200 Sobic001G431000--Sobic001G227400 Sobic006G077200 Sobic006G077200 Sobic001G431000--Sobic006G077200 Sobic001G404600 Sobic001G404600 Sobic001G431000--Sobic001G404600 Sobic004G257100 Sobic004G257100 Sobic001G431000--Sobic004G257100 Sobic008G157200 Sobic008G157200 Sobic001G431000--Sobic008G157200 Sobic004G241900 Sobic004G241900 Sobic001G431000--Sobic004G241900 Sobic001G449900 Sobic001G449900 Sobic001G431000--Sobic001G449900
Octagon: transcription factors


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