Gene annotation
Transcriptome id Sobic.003G252100.1,Sobic.003G252100.2
Synonym Sb03g030770
Functional annotation DDT, putative, expressed
UniProt A0A1W0VYV3 , A0A1B6Q591
Pfam PF15613 PF15612 PF15614 PF05066 PF02791 PF15613 PF15612 PF15614 PF05066 PF00046 PF02791
Panther DB PTHR36968 PTHR36968:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0006351transcription, DNA-templated GO:0006355regulation of transcription, DNA-templated GO:0006351transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G44180 : Homeodomain-like transcriptional regulator
RAP-DB (Rice) LOC_Os01g48180.1,LOC_Os05g48820.1 : DDT domain containing protein, putative, expressed,DDT, putative, expressed
MaizeGDB (Corn) Zm00025a038775 , Zm00025a028098 , Zm00025a028099 , Zm00025a028095 , Zm00025a056168 , Zm00025a044556 , Zm00025a036600
Brachypodium KQK04896 , KQK09134
Barley HORVU3Hr1G061660.4 , HORVU3Hr1G061660.5 , HORVU3Hr1G061660.7 , HORVU3Hr1G061660.1 , HORVU3Hr1G061660.2 , HORVU3Hr1G061660.3 , HORVU3Hr1G061660.8 , HORVU3Hr1G061660.9 , HORVU1Hr1G087180.7 , HORVU1Hr1G087180.6 , HORVU1Hr1G087180.8 , HORVU3Hr1G061660.14 , HORVU3Hr1G061660.12 , HORVU3Hr1G061660.13 , HORVU3Hr1G061660.10 , HORVU3Hr1G061660.11 , HORVU1Hr1G087180.5 , HORVU1Hr1G087180.4 , HORVU1Hr1G087180.3 , HORVU1Hr1G087180.2 , HORVU1Hr1G087180.1
Wheat TraesCS1A02G395600 , TraesCS3A02G245700 , TraesCS3A02G245700 , TraesCS1B02G424100 , TraesCS3D02G245800 , TraesCS3D02G245800 , TraesCS3D02G245800 , TraesCS3B02G273900 , TraesCS3B02G273900 , TraesCS3B02G273900 , TraesCS1D02G403700
Populus PNT39608 , PNT39609


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G314000 expressed protein -
2 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
3 Sobic.003G401600 expressed protein K12879: THO complex subunit 2
4 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
5 Sobic.004G023000 SAC9, putative, expressed -
6 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
7 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
8 Sobic.002G211800 AT-rich interaction region, putative, expressed -
9 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
10 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
11 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
12 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
13 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
14 Sobic.007G117400 expressed protein -
15 Sobic.001G363500 DIRP family protein, putative, expressed -
16 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
17 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
18 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
19 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
20 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A


Gene co-expression network
sample Sobic003G252100 Sobic003G252100 Sobic004G314000 Sobic004G314000 Sobic003G252100--Sobic004G314000 Sobic004G065100 Sobic004G065100 Sobic003G252100--Sobic004G065100 Sobic003G401600 Sobic003G401600 Sobic003G252100--Sobic003G401600 Sobic002G299700 Sobic002G299700 Sobic003G252100--Sobic002G299700 Sobic004G023000 Sobic004G023000 Sobic003G252100--Sobic004G023000 Sobic005G008800 Sobic005G008800 Sobic003G252100--Sobic005G008800 Sobic004G242400 Sobic004G242400 Sobic003G252100--Sobic004G242400 Sobic002G211800 Sobic002G211800 Sobic003G252100--Sobic002G211800 Sobic010G139000 Sobic010G139000 Sobic003G252100--Sobic010G139000 Sobic004G314000--Sobic010G139000 Sobic004G314000--Sobic005G008800 Sobic005G112300 Sobic005G112300 Sobic004G314000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic004G314000--Sobic010G279450 Sobic004G314000--Sobic004G242400 Sobic010G206900 Sobic010G206900 Sobic004G314000--Sobic010G206900 Sobic004G314000--Sobic003G401600 Sobic002G309600 Sobic002G309600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic001G241200 Sobic001G241200 Sobic004G065100--Sobic001G241200 Sobic004G065100--Sobic002G309600 Sobic007G117400 Sobic007G117400 Sobic004G065100--Sobic007G117400 Sobic003G119000 Sobic003G119000 Sobic004G065100--Sobic003G119000 Sobic005G027400 Sobic005G027400 Sobic004G065100--Sobic005G027400 Sobic001G154900 Sobic001G154900 Sobic004G065100--Sobic001G154900 Sobic004G065100--Sobic005G008800 Sobic005G104500 Sobic005G104500 Sobic004G065100--Sobic005G104500 Sobic004G065100--Sobic005G112300 Sobic003G401600--Sobic004G314000 Sobic003G401600--Sobic005G008800 Sobic001G072500 Sobic001G072500 Sobic003G401600--Sobic001G072500 Sobic003G401600--Sobic010G206900 Sobic003G401600--Sobic010G139000 Sobic004G209600 Sobic004G209600 Sobic003G401600--Sobic004G209600 Sobic007G161000 Sobic007G161000 Sobic003G401600--Sobic007G161000 Sobic003G401600--Sobic003G252100 Sobic008G192600 Sobic008G192600 Sobic003G401600--Sobic008G192600 Sobic010G116600 Sobic010G116600 Sobic002G299700--Sobic010G116600 Sobic001G363500 Sobic001G363500 Sobic002G299700--Sobic001G363500 Sobic002G299700--Sobic005G112300 Sobic002G397500 Sobic002G397500 Sobic002G299700--Sobic002G397500 Sobic004G048800 Sobic004G048800 Sobic002G299700--Sobic004G048800 Sobic002G299700--Sobic004G242400 Sobic007G105100 Sobic007G105100 Sobic002G299700--Sobic007G105100 Sobic003G408600 Sobic003G408600 Sobic002G299700--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G299700--Sobic007G062800 Sobic009G165700 Sobic009G165700 Sobic004G023000--Sobic009G165700 Sobic010G247800 Sobic010G247800 Sobic004G023000--Sobic010G247800 Sobic003G095900 Sobic003G095900 Sobic004G023000--Sobic003G095900 Sobic004G023000--Sobic004G314000 Sobic009G256400 Sobic009G256400 Sobic004G023000--Sobic009G256400 Sobic004G023000--Sobic010G139000 Sobic004G023000--Sobic002G211800 Sobic004G263600 Sobic004G263600 Sobic004G023000--Sobic004G263600 Sobic004G023000--Sobic010G206900 Sobic001G540400 Sobic001G540400 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic004G242400--Sobic007G062800 Sobic004G242400--Sobic009G109200 Sobic010G105200 Sobic010G105200 Sobic004G242400--Sobic010G105200 Sobic004G276400 Sobic004G276400 Sobic004G242400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic004G242400--Sobic010G010700 Sobic010G112100 Sobic010G112100 Sobic004G242400--Sobic010G112100 Sobic004G242400--Sobic004G314000 Sobic009G256300 Sobic009G256300 Sobic004G242400--Sobic009G256300 Sobic001G433800 Sobic001G433800 Sobic004G242400--Sobic001G433800 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G344000 Sobic002G344000 Sobic002G211800--Sobic002G344000 Sobic003G166750 Sobic003G166750 Sobic002G211800--Sobic003G166750 Sobic002G211800--Sobic004G023000 Sobic009G132700 Sobic009G132700 Sobic002G211800--Sobic009G132700 Sobic003G170900 Sobic003G170900 Sobic002G211800--Sobic003G170900 Sobic002G294800 Sobic002G294800 Sobic002G211800--Sobic002G294800 Sobic003G362600 Sobic003G362600 Sobic002G211800--Sobic003G362600 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G139000--Sobic010G279450 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G139000--Sobic010G112100 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800
Octagon: transcription factors


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