Gene annotation
Transcriptome id Sobic.002G127100.5,Sobic.002G127100.6,Sobic.002G127100.3,Sobic.002G127100.4
Synonym Sb02g010960
Functional annotation RNA-binding protein Luc7-like, putative, expressed
UniProt C5X571
Pfam PF03194
Panther DB PTHR12375 PTHR12375:SF18
NCBI CDD KOG0796; Spliceosome subunit
KEGG Orthology -
Gene Ontology GO:0006376; mRNA splice site selection GO:0005685U1 snRNP GO:0003729mRNA binding


Orthologs (automatic annotation)
TAIR AT5G51410 : LUC7 N_terminus domain-containing protein
RAP-DB (Rice) LOC_Os07g27300.2,LOC_Os07g27300.1 : RNA-binding protein Luc7-like, putative, expressed
MaizeGDB (Corn) Zm00025a045856 , Zm00025a013553
Brachypodium PNT75208 , KQK16417 , KQK16416 , KQK16418
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G347300 splicing factor, arginine/serine-rich 16, putative, expressed K13168: splicing factor, arginine/serine-rich 16
2 Sobic.006G251900 - -
3 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
4 Sobic.003G108700 RNA recognition motif, putative, expressed -
5 Sobic.008G113100 protein binding protein, putative, expressed -
6 Sobic.007G146900 ARID/BRIGHT DNA-binding domain containing protein, expressed -
7 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
8 Sobic.005G021500 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
9 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
10 Sobic.006G012400 expressed protein -
11 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
12 Sobic.004G237100 AP2/EREBP transcription factor BABY BOOM, putative, expressed -
13 Sobic.005G064000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
14 Sobic.007G117400 expressed protein -
15 Sobic.006G161000 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
16 Sobic.007G004000 YL1 nuclear protein C-terminal domain containing protein, expressed K11664: VPS72, TCFL1, vacuolar protein sorting-associated protein 72
17 Sobic.005G207500 AAA-type ATPase family protein, putative, expressed -
18 Sobic.003G012100 smr domain containing protein, expressed -
19 Sobic.002G248400 ENT domain containing protein, expressed -
20 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4


Gene co-expression network
sample Sobic002G127100 Sobic002G127100 Sobic001G347300 Sobic001G347300 Sobic002G127100--Sobic001G347300 Sobic006G251900 Sobic006G251900 Sobic002G127100--Sobic006G251900 Sobic007G126600 Sobic007G126600 Sobic002G127100--Sobic007G126600 Sobic003G108700 Sobic003G108700 Sobic002G127100--Sobic003G108700 Sobic008G113100 Sobic008G113100 Sobic002G127100--Sobic008G113100 Sobic007G146900 Sobic007G146900 Sobic002G127100--Sobic007G146900 Sobic004G257400 Sobic004G257400 Sobic002G127100--Sobic004G257400 Sobic005G021500 Sobic005G021500 Sobic002G127100--Sobic005G021500 Sobic001G088100 Sobic001G088100 Sobic002G127100--Sobic001G088100 Sobic001G347300--Sobic007G126600 Sobic002G145101 Sobic002G145101 Sobic001G347300--Sobic002G145101 Sobic007G065400 Sobic007G065400 Sobic001G347300--Sobic007G065400 Sobic002G243900 Sobic002G243900 Sobic001G347300--Sobic002G243900 Sobic001G347300--Sobic003G108700 Sobic001G511500 Sobic001G511500 Sobic001G347300--Sobic001G511500 Sobic001G347300--Sobic006G251900 Sobic003G200200 Sobic003G200200 Sobic001G347300--Sobic003G200200 Sobic003G170100 Sobic003G170100 Sobic001G347300--Sobic003G170100 Sobic006G251900--Sobic001G347300 Sobic006G251900--Sobic007G126600 Sobic009G083400 Sobic009G083400 Sobic006G251900--Sobic009G083400 Sobic006G251900--Sobic003G108700 Sobic006G251900--Sobic001G511500 Sobic004G216500 Sobic004G216500 Sobic006G251900--Sobic004G216500 Sobic006G251900--Sobic002G127100 Sobic008G192600 Sobic008G192600 Sobic006G251900--Sobic008G192600 Sobic003G038500 Sobic003G038500 Sobic006G251900--Sobic003G038500 Sobic007G126600--Sobic008G192600 Sobic003G119000 Sobic003G119000 Sobic007G126600--Sobic003G119000 Sobic002G404700 Sobic002G404700 Sobic007G126600--Sobic002G404700 Sobic007G126600--Sobic007G065400 Sobic009G026500 Sobic009G026500 Sobic007G126600--Sobic009G026500 Sobic002G006900 Sobic002G006900 Sobic007G126600--Sobic002G006900 Sobic007G126600--Sobic003G108700 Sobic007G126600--Sobic001G347300 Sobic001G241200 Sobic001G241200 Sobic007G126600--Sobic001G241200 Sobic002G248400 Sobic002G248400 Sobic003G108700--Sobic002G248400 Sobic002G157000 Sobic002G157000 Sobic003G108700--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic003G108700--Sobic003G268300 Sobic003G108700--Sobic004G257400 Sobic003G108700--Sobic007G126600 Sobic001G420200 Sobic001G420200 Sobic003G108700--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic003G108700--Sobic008G173900 Sobic003G108700--Sobic003G200200 Sobic007G167500 Sobic007G167500 Sobic003G108700--Sobic007G167500 Sobic004G258700 Sobic004G258700 Sobic008G113100--Sobic004G258700 Sobic008G028700 Sobic008G028700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic001G456900 Sobic001G456900 Sobic008G113100--Sobic001G456900 Sobic009G024000 Sobic009G024000 Sobic008G113100--Sobic009G024000 Sobic009G040600 Sobic009G040600 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic004G039200 Sobic004G039200 Sobic008G113100--Sobic004G039200 Sobic002G353600 Sobic002G353600 Sobic007G146900--Sobic002G353600 Sobic002G153700 Sobic002G153700 Sobic007G146900--Sobic002G153700 Sobic002G264200 Sobic002G264200 Sobic007G146900--Sobic002G264200 Sobic005G207500 Sobic005G207500 Sobic007G146900--Sobic005G207500 Sobic007G026000 Sobic007G026000 Sobic007G146900--Sobic007G026000 Sobic009G119000 Sobic009G119000 Sobic007G146900--Sobic009G119000 Sobic007G119200 Sobic007G119200 Sobic007G146900--Sobic007G119200 Sobic008G054500 Sobic008G054500 Sobic007G146900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G146900--Sobic003G397800 Sobic004G257400--Sobic002G248400 Sobic004G257400--Sobic003G108700 Sobic004G257400--Sobic008G054500 Sobic003G445400 Sobic003G445400 Sobic004G257400--Sobic003G445400 Sobic007G026300 Sobic007G026300 Sobic004G257400--Sobic007G026300 Sobic003G073000 Sobic003G073000 Sobic004G257400--Sobic003G073000 Sobic001G090400 Sobic001G090400 Sobic004G257400--Sobic001G090400 Sobic004G257400--Sobic007G167500 Sobic001G251700 Sobic001G251700 Sobic004G257400--Sobic001G251700 Sobic002G320500 Sobic002G320500 Sobic005G021500--Sobic002G320500 Sobic009G065100 Sobic009G065100 Sobic005G021500--Sobic009G065100 Sobic003G394300 Sobic003G394300 Sobic005G021500--Sobic003G394300 Sobic001G533700 Sobic001G533700 Sobic005G021500--Sobic001G533700 Sobic004G158200 Sobic004G158200 Sobic005G021500--Sobic004G158200 Sobic005G021500--Sobic004G039200 Sobic009G000500 Sobic009G000500 Sobic005G021500--Sobic009G000500 Sobic006G133800 Sobic006G133800 Sobic005G021500--Sobic006G133800 Sobic005G021500--Sobic001G090400 Sobic009G005500 Sobic009G005500 Sobic001G088100--Sobic009G005500 Sobic001G088100--Sobic007G119200 Sobic010G069100 Sobic010G069100 Sobic001G088100--Sobic010G069100 Sobic010G236400 Sobic010G236400 Sobic001G088100--Sobic010G236400 Sobic001G088100--Sobic003G394300 Sobic007G105100 Sobic007G105100 Sobic001G088100--Sobic007G105100 Sobic001G088100--Sobic001G241200 Sobic004G274200 Sobic004G274200 Sobic001G088100--Sobic004G274200 Sobic003G408600 Sobic003G408600 Sobic001G088100--Sobic003G408600
Octagon: transcription factors


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