Gene annotation
Transcriptome id Sobic.004G237100.1
Synonym CHO1, AIL5, EMK, Sb04g027940
Functional annotation AP2/EREBP transcription factor BABY BOOM, putative, expressed
UniProt A0A194YRE6
Pfam PF00847
Panther DB PTHR32467
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0007275multicellular organism development


Orthologs (automatic annotation)
TAIR AT3G20840 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os01g67410.1 : AP2/EREBP transcription factor BABY BOOM, putative, expressed
MaizeGDB (Corn) Zm00025a022097
Brachypodium KQK01932 , KQK01931
Barley HORVU6Hr1G075640.14 , HORVU6Hr1G075640.15 , HORVU6Hr1G075640.16 , HORVU6Hr1G075640.17 , HORVU6Hr1G075640.11 , HORVU6Hr1G075640.13 , HORVU6Hr1G075640.18 , HORVU6Hr1G075640.21 , HORVU6Hr1G075640.20 , HORVU6Hr1G075640.23 , HORVU6Hr1G075640.22 , HORVU6Hr1G075640.25 , HORVU6Hr1G075640.24 , HORVU6Hr1G075640.8 , HORVU6Hr1G075640.9 , HORVU6Hr1G075640.4 , HORVU6Hr1G075640.5 , HORVU6Hr1G075640.2 , HORVU6Hr1G075640.3
Wheat TraesCS6A02G306300 , TraesCS6A02G306300 , TraesCS6D02G285400 , TraesCS6D02G285400 , TraesCS6B02G334700 , TraesCS6B02G334700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
2 Sobic.001G375300 ulp1 protease family protein, putative, expressed K08592: sentrin-specific protease 1
3 Sobic.002G277600 XAP5 family protein, putative, expressed K13119: FAM50, protein FAM50
4 Sobic.005G021500 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
5 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -
6 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
7 Sobic.004G264300 nuclear matrix constituent protein 1-like, putative, expressed -
8 Sobic.002G127100 RNA-binding protein Luc7-like, putative, expressed -
9 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
10 Sobic.003G241800 - -
11 Sobic.010G167900 expressed protein K14376: poly(A) polymerase
12 Sobic.005G207500 AAA-type ATPase family protein, putative, expressed -
13 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
15 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
16 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
17 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
18 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
19 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
20 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14


Gene co-expression network
sample Sobic004G237100 Sobic004G237100 Sobic001G088100 Sobic001G088100 Sobic004G237100--Sobic001G088100 Sobic001G375300 Sobic001G375300 Sobic004G237100--Sobic001G375300 Sobic002G277600 Sobic002G277600 Sobic004G237100--Sobic002G277600 Sobic005G021500 Sobic005G021500 Sobic004G237100--Sobic005G021500 Sobic004G088200 Sobic004G088200 Sobic004G237100--Sobic004G088200 Sobic005G079800 Sobic005G079800 Sobic004G237100--Sobic005G079800 Sobic004G264300 Sobic004G264300 Sobic004G237100--Sobic004G264300 Sobic002G127100 Sobic002G127100 Sobic004G237100--Sobic002G127100 Sobic001G124000 Sobic001G124000 Sobic004G237100--Sobic001G124000 Sobic009G005500 Sobic009G005500 Sobic001G088100--Sobic009G005500 Sobic007G119200 Sobic007G119200 Sobic001G088100--Sobic007G119200 Sobic010G069100 Sobic010G069100 Sobic001G088100--Sobic010G069100 Sobic010G236400 Sobic010G236400 Sobic001G088100--Sobic010G236400 Sobic003G394300 Sobic003G394300 Sobic001G088100--Sobic003G394300 Sobic007G105100 Sobic007G105100 Sobic001G088100--Sobic007G105100 Sobic001G241200 Sobic001G241200 Sobic001G088100--Sobic001G241200 Sobic004G274200 Sobic004G274200 Sobic001G088100--Sobic004G274200 Sobic003G408600 Sobic003G408600 Sobic001G088100--Sobic003G408600 Sobic001G360900 Sobic001G360900 Sobic001G375300--Sobic001G360900 Sobic001G375300--Sobic001G124000 Sobic001G375300--Sobic004G237100 Sobic001G375300--Sobic002G277600 Sobic008G103200 Sobic008G103200 Sobic001G375300--Sobic008G103200 Sobic003G241800 Sobic003G241800 Sobic001G375300--Sobic003G241800 Sobic009G247400 Sobic009G247400 Sobic001G375300--Sobic009G247400 Sobic007G000100 Sobic007G000100 Sobic001G375300--Sobic007G000100 Sobic008G011100 Sobic008G011100 Sobic001G375300--Sobic008G011100 Sobic002G277600--Sobic001G124000 Sobic002G277600--Sobic004G237100 Sobic002G277600--Sobic001G375300 Sobic003G160000 Sobic003G160000 Sobic002G277600--Sobic003G160000 Sobic001G107900 Sobic001G107900 Sobic002G277600--Sobic001G107900 Sobic009G178800 Sobic009G178800 Sobic002G277600--Sobic009G178800 Sobic004G065100 Sobic004G065100 Sobic002G277600--Sobic004G065100 Sobic008G124700 Sobic008G124700 Sobic002G277600--Sobic008G124700 Sobic001G090400 Sobic001G090400 Sobic002G277600--Sobic001G090400 Sobic002G320500 Sobic002G320500 Sobic005G021500--Sobic002G320500 Sobic009G065100 Sobic009G065100 Sobic005G021500--Sobic009G065100 Sobic005G021500--Sobic003G394300 Sobic001G533700 Sobic001G533700 Sobic005G021500--Sobic001G533700 Sobic004G158200 Sobic004G158200 Sobic005G021500--Sobic004G158200 Sobic004G039200 Sobic004G039200 Sobic005G021500--Sobic004G039200 Sobic009G000500 Sobic009G000500 Sobic005G021500--Sobic009G000500 Sobic006G133800 Sobic006G133800 Sobic005G021500--Sobic006G133800 Sobic005G021500--Sobic001G090400 Sobic004G088200--Sobic003G394300 Sobic010G167900 Sobic010G167900 Sobic004G088200--Sobic010G167900 Sobic005G207500 Sobic005G207500 Sobic004G088200--Sobic005G207500 Sobic006G096900 Sobic006G096900 Sobic004G088200--Sobic006G096900 Sobic002G153700 Sobic002G153700 Sobic004G088200--Sobic002G153700 Sobic007G212300 Sobic007G212300 Sobic004G088200--Sobic007G212300 Sobic001G311500 Sobic001G311500 Sobic004G088200--Sobic001G311500 Sobic003G307000 Sobic003G307000 Sobic004G088200--Sobic003G307000 Sobic005G008800 Sobic005G008800 Sobic004G088200--Sobic005G008800 Sobic003G438900 Sobic003G438900 Sobic005G079800--Sobic003G438900 Sobic001G253200 Sobic001G253200 Sobic005G079800--Sobic001G253200 Sobic007G191700 Sobic007G191700 Sobic005G079800--Sobic007G191700 Sobic005G079800--Sobic002G153700 Sobic005G079800--Sobic005G021500 Sobic003G427100 Sobic003G427100 Sobic005G079800--Sobic003G427100 Sobic007G054400 Sobic007G054400 Sobic005G079800--Sobic007G054400 Sobic010G194700 Sobic010G194700 Sobic005G079800--Sobic010G194700 Sobic004G096500 Sobic004G096500 Sobic005G079800--Sobic004G096500 Sobic003G293200 Sobic003G293200 Sobic004G264300--Sobic003G293200 Sobic004G264300--Sobic004G039200 Sobic007G117400 Sobic007G117400 Sobic004G264300--Sobic007G117400 Sobic006G052300 Sobic006G052300 Sobic004G264300--Sobic006G052300 Sobic004G145500 Sobic004G145500 Sobic004G264300--Sobic004G145500 Sobic004G264300--Sobic007G054400 Sobic009G024000 Sobic009G024000 Sobic004G264300--Sobic009G024000 Sobic004G009600 Sobic004G009600 Sobic004G264300--Sobic004G009600 Sobic004G264300--Sobic001G124000 Sobic001G347300 Sobic001G347300 Sobic002G127100--Sobic001G347300 Sobic006G251900 Sobic006G251900 Sobic002G127100--Sobic006G251900 Sobic007G126600 Sobic007G126600 Sobic002G127100--Sobic007G126600 Sobic003G108700 Sobic003G108700 Sobic002G127100--Sobic003G108700 Sobic008G113100 Sobic008G113100 Sobic002G127100--Sobic008G113100 Sobic007G146900 Sobic007G146900 Sobic002G127100--Sobic007G146900 Sobic004G257400 Sobic004G257400 Sobic002G127100--Sobic004G257400 Sobic002G127100--Sobic005G021500 Sobic002G127100--Sobic001G088100 Sobic009G024400 Sobic009G024400 Sobic001G124000--Sobic009G024400 Sobic001G124000--Sobic004G039200 Sobic001G124000--Sobic008G113100 Sobic004G208900 Sobic004G208900 Sobic001G124000--Sobic004G208900 Sobic001G227200 Sobic001G227200 Sobic001G124000--Sobic001G227200 Sobic001G124000--Sobic007G117400 Sobic001G124000--Sobic009G065100 Sobic010G277500 Sobic010G277500 Sobic001G124000--Sobic010G277500 Sobic001G124000--Sobic008G011100
Octagon: transcription factors


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