Gene annotation
Transcriptome id Sobic.001G375300.1
Synonym Sb01g035640, ESD4, ATESD4
Functional annotation ulp1 protease family protein, putative, expressed
UniProt C5X0N0
Pfam PF02902
Panther DB PTHR12606 PTHR12606:SF23
NCBI CDD KOG3246; Sentrin-specific cysteine protease (Ulp1 family)
KEGG Orthology K08592; sentrin-specific protease 1
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT4G15880 : Cysteine proteinases superfamily protein
RAP-DB (Rice) LOC_Os03g22400.1 : ulp1 protease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002407
Brachypodium KQK21735
Barley HORVU2Hr1G019620.18 , HORVU2Hr1G019620.19 , HORVU2Hr1G019620.14 , HORVU2Hr1G019620.15 , HORVU2Hr1G019620.17 , HORVU2Hr1G019620.10 , HORVU2Hr1G019620.11 , HORVU2Hr1G019620.12 , HORVU2Hr1G019620.6 , HORVU2Hr1G019620.8 , HORVU2Hr1G019620.9 , HORVU2Hr1G019620.23 , HORVU2Hr1G019620.22 , HORVU2Hr1G019620.25 , HORVU2Hr1G019620.27 , HORVU2Hr1G019620.26 , HORVU2Hr1G019620.29 , HORVU2Hr1G019620.28 , HORVU2Hr1G019620.7 , HORVU2Hr1G019620.5 , HORVU2Hr1G019620.1 , HORVU2Hr1G019620.36 , HORVU2Hr1G019620.34 , HORVU2Hr1G019620.35 , HORVU2Hr1G019620.32 , HORVU2Hr1G019620.30 , HORVU2Hr1G019620.31 , HORVU2Hr1G019620.39 , HORVU2Hr1G019620.16 , HORVU2Hr1G019620.13
Wheat TraesCS2A02G112900 , TraesCS2A02G112900 , TraesCS4D02G168400 , TraesCS4A02G157500 , TraesCS4A02G157500 , TraesCS4D02G168400 , TraesCS2B02G131700 , TraesCS4B02G155400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G360900 peptidyl-prolyl isomerase PASTICCINO1, putative, expressed -
2 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
3 Sobic.004G237100 AP2/EREBP transcription factor BABY BOOM, putative, expressed -
4 Sobic.002G277600 XAP5 family protein, putative, expressed K13119: FAM50, protein FAM50
5 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
6 Sobic.003G241800 - -
7 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
8 Sobic.007G000100 PWWP domain containing protein, expressed -
9 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
10 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
11 Sobic.010G028800 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
12 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
13 Sobic.002G313400 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12815: DHX38, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16
14 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
15 Sobic.004G264300 nuclear matrix constituent protein 1-like, putative, expressed -
16 Sobic.001G542700 expressed protein -
17 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
18 Sobic.009G005100 - -
19 Sobic.002G068100 aminoacyl-tRNA synthetase, putative, expressed -
20 Sobic.002G336800 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G375300 Sobic001G375300 Sobic001G360900 Sobic001G360900 Sobic001G375300--Sobic001G360900 Sobic001G124000 Sobic001G124000 Sobic001G375300--Sobic001G124000 Sobic004G237100 Sobic004G237100 Sobic001G375300--Sobic004G237100 Sobic002G277600 Sobic002G277600 Sobic001G375300--Sobic002G277600 Sobic008G103200 Sobic008G103200 Sobic001G375300--Sobic008G103200 Sobic003G241800 Sobic003G241800 Sobic001G375300--Sobic003G241800 Sobic009G247400 Sobic009G247400 Sobic001G375300--Sobic009G247400 Sobic007G000100 Sobic007G000100 Sobic001G375300--Sobic007G000100 Sobic008G011100 Sobic008G011100 Sobic001G375300--Sobic008G011100 Sobic009G065100 Sobic009G065100 Sobic001G360900--Sobic009G065100 Sobic005G084100 Sobic005G084100 Sobic001G360900--Sobic005G084100 Sobic003G163100 Sobic003G163100 Sobic001G360900--Sobic003G163100 Sobic007G054400 Sobic007G054400 Sobic001G360900--Sobic007G054400 Sobic001G253200 Sobic001G253200 Sobic001G360900--Sobic001G253200 Sobic001G360900--Sobic008G011100 Sobic006G210100 Sobic006G210100 Sobic001G360900--Sobic006G210100 Sobic004G018300 Sobic004G018300 Sobic001G360900--Sobic004G018300 Sobic004G084300 Sobic004G084300 Sobic001G360900--Sobic004G084300 Sobic009G024400 Sobic009G024400 Sobic001G124000--Sobic009G024400 Sobic004G039200 Sobic004G039200 Sobic001G124000--Sobic004G039200 Sobic008G113100 Sobic008G113100 Sobic001G124000--Sobic008G113100 Sobic004G208900 Sobic004G208900 Sobic001G124000--Sobic004G208900 Sobic001G227200 Sobic001G227200 Sobic001G124000--Sobic001G227200 Sobic007G117400 Sobic007G117400 Sobic001G124000--Sobic007G117400 Sobic001G124000--Sobic009G065100 Sobic010G277500 Sobic010G277500 Sobic001G124000--Sobic010G277500 Sobic001G124000--Sobic008G011100 Sobic001G088100 Sobic001G088100 Sobic004G237100--Sobic001G088100 Sobic004G237100--Sobic001G375300 Sobic004G237100--Sobic002G277600 Sobic005G021500 Sobic005G021500 Sobic004G237100--Sobic005G021500 Sobic004G088200 Sobic004G088200 Sobic004G237100--Sobic004G088200 Sobic005G079800 Sobic005G079800 Sobic004G237100--Sobic005G079800 Sobic004G264300 Sobic004G264300 Sobic004G237100--Sobic004G264300 Sobic002G127100 Sobic002G127100 Sobic004G237100--Sobic002G127100 Sobic004G237100--Sobic001G124000 Sobic002G277600--Sobic001G124000 Sobic002G277600--Sobic004G237100 Sobic002G277600--Sobic001G375300 Sobic003G160000 Sobic003G160000 Sobic002G277600--Sobic003G160000 Sobic001G107900 Sobic001G107900 Sobic002G277600--Sobic001G107900 Sobic009G178800 Sobic009G178800 Sobic002G277600--Sobic009G178800 Sobic004G065100 Sobic004G065100 Sobic002G277600--Sobic004G065100 Sobic008G124700 Sobic008G124700 Sobic002G277600--Sobic008G124700 Sobic001G090400 Sobic001G090400 Sobic002G277600--Sobic001G090400 Sobic008G047800 Sobic008G047800 Sobic008G103200--Sobic008G047800 Sobic003G266001 Sobic003G266001 Sobic008G103200--Sobic003G266001 Sobic008G103200--Sobic004G065100 Sobic001G222500 Sobic001G222500 Sobic008G103200--Sobic001G222500 Sobic010G069100 Sobic010G069100 Sobic008G103200--Sobic010G069100 Sobic002G310200 Sobic002G310200 Sobic008G103200--Sobic002G310200 Sobic008G103200--Sobic004G084300 Sobic001G154900 Sobic001G154900 Sobic008G103200--Sobic001G154900 Sobic004G072100 Sobic004G072100 Sobic008G103200--Sobic004G072100 Sobic003G241800--Sobic007G000100 Sobic003G119000 Sobic003G119000 Sobic003G241800--Sobic003G119000 Sobic003G241800--Sobic007G117400 Sobic007G126600 Sobic007G126600 Sobic003G241800--Sobic007G126600 Sobic003G241800--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic003G241800--Sobic007G161000 Sobic003G241800--Sobic004G039200 Sobic005G207500 Sobic005G207500 Sobic003G241800--Sobic005G207500 Sobic007G065400 Sobic007G065400 Sobic003G241800--Sobic007G065400 Sobic001G311500 Sobic001G311500 Sobic009G247400--Sobic001G311500 Sobic010G279450 Sobic010G279450 Sobic009G247400--Sobic010G279450 Sobic009G260500 Sobic009G260500 Sobic009G247400--Sobic009G260500 Sobic004G009600 Sobic004G009600 Sobic009G247400--Sobic004G009600 Sobic001G214600 Sobic001G214600 Sobic009G247400--Sobic001G214600 Sobic001G363500 Sobic001G363500 Sobic009G247400--Sobic001G363500 Sobic001G219600 Sobic001G219600 Sobic009G247400--Sobic001G219600 Sobic002G317200 Sobic002G317200 Sobic009G247400--Sobic002G317200 Sobic004G314000 Sobic004G314000 Sobic009G247400--Sobic004G314000 Sobic001G511500 Sobic001G511500 Sobic007G000100--Sobic001G511500 Sobic003G307000 Sobic003G307000 Sobic007G000100--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic007G000100--Sobic008G173900 Sobic003G445400 Sobic003G445400 Sobic007G000100--Sobic003G445400 Sobic007G000100--Sobic003G119000 Sobic002G153700 Sobic002G153700 Sobic007G000100--Sobic002G153700 Sobic009G000500 Sobic009G000500 Sobic007G000100--Sobic009G000500 Sobic007G000100--Sobic003G241800 Sobic004G031700 Sobic004G031700 Sobic007G000100--Sobic004G031700 Sobic008G011100--Sobic001G219600 Sobic008G011100--Sobic004G039200 Sobic004G087600 Sobic004G087600 Sobic008G011100--Sobic004G087600 Sobic002G031400 Sobic002G031400 Sobic008G011100--Sobic002G031400 Sobic008G011100--Sobic009G260500 Sobic008G011100--Sobic004G018300 Sobic001G167200 Sobic001G167200 Sobic008G011100--Sobic001G167200 Sobic008G011100--Sobic009G065100 Sobic008G011100--Sobic001G311500
Octagon: transcription factors


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