Gene annotation
Transcriptome id Sobic.003G241800.6,Sobic.003G241800.4,Sobic.003G241800.7,Sobic.003G241800.5
Synonym Sb03g029860
Functional annotation -
UniProt A0A1W0VYS3 , A0A1W0VYP7 , A0A1W0VYQ4 , A0A1W0VYR3
Pfam -
Panther DB PTHR13585 PTHR13585:SF4
NCBI CDD KOG4207; Predicted splicing factor, SR protein superfamily
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g46710.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a038700 , Zm00025a028204
Brachypodium KQK09006
Barley HORVU3Hr1G059120.18 , HORVU3Hr1G059120.19 , HORVU3Hr1G059120.16 , HORVU3Hr1G059120.17 , HORVU3Hr1G059120.14 , HORVU3Hr1G059120.15 , HORVU3Hr1G059120.12 , HORVU3Hr1G059120.13 , HORVU3Hr1G059120.10 , HORVU3Hr1G059120.11 , HORVU3Hr1G059120.4 , HORVU3Hr1G059120.5 , HORVU3Hr1G059120.6 , HORVU3Hr1G059120.2 , HORVU3Hr1G059120.3 , HORVU3Hr1G059120.8
Wheat TraesCS3A02G237300 , TraesCS3A02G237300 , TraesCS3D02G237700 , TraesCS3B02G265900
Populus -


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cDNA sequences
Sobic.003G241800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G000100 PWWP domain containing protein, expressed -
2 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
3 Sobic.007G117400 expressed protein -
4 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
5 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
6 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
7 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
8 Sobic.005G207500 AAA-type ATPase family protein, putative, expressed -
9 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
10 Sobic.003G372700 expressed protein -
11 Sobic.001G174900 DEK C terminal domain containing protein, expressed K17046: protein DEK
12 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
13 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
14 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
15 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
16 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
17 Sobic.001G241200 protein kinase domain containing protein, expressed -
18 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
19 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
20 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -


Gene co-expression network
sample Sobic003G241800 Sobic003G241800 Sobic007G000100 Sobic007G000100 Sobic003G241800--Sobic007G000100 Sobic003G119000 Sobic003G119000 Sobic003G241800--Sobic003G119000 Sobic007G117400 Sobic007G117400 Sobic003G241800--Sobic007G117400 Sobic007G126600 Sobic007G126600 Sobic003G241800--Sobic007G126600 Sobic004G065100 Sobic004G065100 Sobic003G241800--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic003G241800--Sobic007G161000 Sobic004G039200 Sobic004G039200 Sobic003G241800--Sobic004G039200 Sobic005G207500 Sobic005G207500 Sobic003G241800--Sobic005G207500 Sobic007G065400 Sobic007G065400 Sobic003G241800--Sobic007G065400 Sobic001G511500 Sobic001G511500 Sobic007G000100--Sobic001G511500 Sobic003G307000 Sobic003G307000 Sobic007G000100--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic007G000100--Sobic008G173900 Sobic003G445400 Sobic003G445400 Sobic007G000100--Sobic003G445400 Sobic007G000100--Sobic003G119000 Sobic002G153700 Sobic002G153700 Sobic007G000100--Sobic002G153700 Sobic009G000500 Sobic009G000500 Sobic007G000100--Sobic009G000500 Sobic007G000100--Sobic003G241800 Sobic004G031700 Sobic004G031700 Sobic007G000100--Sobic004G031700 Sobic003G372700 Sobic003G372700 Sobic003G119000--Sobic003G372700 Sobic002G071500 Sobic002G071500 Sobic003G119000--Sobic002G071500 Sobic003G280800 Sobic003G280800 Sobic003G119000--Sobic003G280800 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic003G119000--Sobic007G126600 Sobic003G119000--Sobic001G511500 Sobic002G309600 Sobic002G309600 Sobic003G119000--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic003G119000--Sobic001G241200 Sobic007G117400--Sobic002G309600 Sobic007G117400--Sobic001G241200 Sobic007G117400--Sobic004G065100 Sobic007G117400--Sobic007G161000 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic001G154900 Sobic001G154900 Sobic007G117400--Sobic001G154900 Sobic009G040600 Sobic009G040600 Sobic007G117400--Sobic009G040600 Sobic005G008800 Sobic005G008800 Sobic007G117400--Sobic005G008800 Sobic008G192600 Sobic008G192600 Sobic007G126600--Sobic008G192600 Sobic007G126600--Sobic003G119000 Sobic002G404700 Sobic002G404700 Sobic007G126600--Sobic002G404700 Sobic007G126600--Sobic007G065400 Sobic009G026500 Sobic009G026500 Sobic007G126600--Sobic009G026500 Sobic002G006900 Sobic002G006900 Sobic007G126600--Sobic002G006900 Sobic003G108700 Sobic003G108700 Sobic007G126600--Sobic003G108700 Sobic001G347300 Sobic001G347300 Sobic007G126600--Sobic001G347300 Sobic007G126600--Sobic001G241200 Sobic004G065100--Sobic001G241200 Sobic004G065100--Sobic002G309600 Sobic004G065100--Sobic007G117400 Sobic004G065100--Sobic003G119000 Sobic005G027400 Sobic005G027400 Sobic004G065100--Sobic005G027400 Sobic004G065100--Sobic001G154900 Sobic004G065100--Sobic005G008800 Sobic005G104500 Sobic005G104500 Sobic004G065100--Sobic005G104500 Sobic005G112300 Sobic005G112300 Sobic004G065100--Sobic005G112300 Sobic007G161000--Sobic004G039200 Sobic007G161000--Sobic007G117400 Sobic009G024000 Sobic009G024000 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic007G161000--Sobic006G182900 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic008G028700 Sobic008G028700 Sobic007G161000--Sobic008G028700 Sobic004G039200--Sobic009G024000 Sobic003G101500 Sobic003G101500 Sobic004G039200--Sobic003G101500 Sobic004G039200--Sobic007G161000 Sobic004G039200--Sobic007G065400 Sobic008G113100 Sobic008G113100 Sobic004G039200--Sobic008G113100 Sobic004G039200--Sobic008G028700 Sobic008G009700 Sobic008G009700 Sobic004G039200--Sobic008G009700 Sobic004G039200--Sobic007G117400 Sobic007G054400 Sobic007G054400 Sobic004G039200--Sobic007G054400 Sobic003G059750 Sobic003G059750 Sobic005G207500--Sobic003G059750 Sobic005G207500--Sobic002G153700 Sobic007G103600 Sobic007G103600 Sobic005G207500--Sobic007G103600 Sobic005G207500--Sobic003G119000 Sobic005G207500--Sobic008G009700 Sobic002G353600 Sobic002G353600 Sobic005G207500--Sobic002G353600 Sobic010G069100 Sobic010G069100 Sobic005G207500--Sobic010G069100 Sobic005G207500--Sobic002G071500 Sobic001G026200 Sobic001G026200 Sobic005G207500--Sobic001G026200 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic007G065400--Sobic003G119000 Sobic007G065400--Sobic003G372700 Sobic007G065400--Sobic008G028700
Octagon: transcription factors


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