Gene annotation
Transcriptome id Sobic.001G174900.1
Synonym Sb01g015200
Functional annotation DEK C terminal domain containing protein, expressed
UniProt C5WTA3
Pfam PF08766
Panther DB PTHR13468 PTHR13468:SF1
NCBI CDD KOG2266; Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain
KEGG Orthology K17046; protein DEK
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G26630 : DEK domain-containing chromatin associated protein
RAP-DB (Rice) LOC_Os03g40010.1 : DEK C terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018257 , Zm00025a020386 , Zm00025a017334 , Zm00025a007190
Brachypodium -
Barley -
Wheat TraesCS4B02G148100 , TraesCS4B02G148100 , TraesCS4D02G153300 , TraesCS4D02G153300 , TraesCS4D02G153300 , TraesCS4D02G153300
Populus -


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cDNA sequences
Sobic.001G174900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G241800 - -
2 Sobic.010G121500 expressed protein K11267: sister chromatid cohesion protein PDS5
3 Sobic.004G264300 nuclear matrix constituent protein 1-like, putative, expressed -
4 Sobic.007G117400 expressed protein -
5 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
6 Sobic.001G107900 fip1 motif family protein, expressed -
7 Sobic.006G251900 - -
8 Sobic.004G216500 hypothetical protein -
9 Sobic.003G012100 smr domain containing protein, expressed -
10 Sobic.003G293200 plus-3 domain containing protein, expressed -
11 Sobic.004G213000 AT hook motif family protein, expressed -
12 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
13 Sobic.003G038500 SSRP1-like FACT complex subunit, putative, expressed K09272: structure-specific recognition protein 1
14 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
15 Sobic.007G000100 PWWP domain containing protein, expressed -
16 Sobic.003G401600 expressed protein K12879: THO complex subunit 2
17 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
18 Sobic.002G127100 RNA-binding protein Luc7-like, putative, expressed -
19 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
20 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1


Gene co-expression network
sample Sobic001G174900 Sobic001G174900 Sobic003G241800 Sobic003G241800 Sobic001G174900--Sobic003G241800 Sobic010G121500 Sobic010G121500 Sobic001G174900--Sobic010G121500 Sobic004G264300 Sobic004G264300 Sobic001G174900--Sobic004G264300 Sobic007G117400 Sobic007G117400 Sobic001G174900--Sobic007G117400 Sobic007G126600 Sobic007G126600 Sobic001G174900--Sobic007G126600 Sobic001G107900 Sobic001G107900 Sobic001G174900--Sobic001G107900 Sobic006G251900 Sobic006G251900 Sobic001G174900--Sobic006G251900 Sobic004G216500 Sobic004G216500 Sobic001G174900--Sobic004G216500 Sobic003G012100 Sobic003G012100 Sobic001G174900--Sobic003G012100 Sobic007G000100 Sobic007G000100 Sobic003G241800--Sobic007G000100 Sobic003G119000 Sobic003G119000 Sobic003G241800--Sobic003G119000 Sobic003G241800--Sobic007G117400 Sobic003G241800--Sobic007G126600 Sobic004G065100 Sobic004G065100 Sobic003G241800--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic003G241800--Sobic007G161000 Sobic004G039200 Sobic004G039200 Sobic003G241800--Sobic004G039200 Sobic005G207500 Sobic005G207500 Sobic003G241800--Sobic005G207500 Sobic007G065400 Sobic007G065400 Sobic003G241800--Sobic007G065400 Sobic004G223000 Sobic004G223000 Sobic010G121500--Sobic004G223000 Sobic010G206900 Sobic010G206900 Sobic010G121500--Sobic010G206900 Sobic010G121500--Sobic003G241800 Sobic001G230000 Sobic001G230000 Sobic010G121500--Sobic001G230000 Sobic003G389200 Sobic003G389200 Sobic010G121500--Sobic003G389200 Sobic007G062800 Sobic007G062800 Sobic010G121500--Sobic007G062800 Sobic010G121500--Sobic001G174900 Sobic010G010700 Sobic010G010700 Sobic010G121500--Sobic010G010700 Sobic001G454500 Sobic001G454500 Sobic010G121500--Sobic001G454500 Sobic003G293200 Sobic003G293200 Sobic004G264300--Sobic003G293200 Sobic004G264300--Sobic004G039200 Sobic004G264300--Sobic007G117400 Sobic006G052300 Sobic006G052300 Sobic004G264300--Sobic006G052300 Sobic004G145500 Sobic004G145500 Sobic004G264300--Sobic004G145500 Sobic007G054400 Sobic007G054400 Sobic004G264300--Sobic007G054400 Sobic009G024000 Sobic009G024000 Sobic004G264300--Sobic009G024000 Sobic004G009600 Sobic004G009600 Sobic004G264300--Sobic004G009600 Sobic001G124000 Sobic001G124000 Sobic004G264300--Sobic001G124000 Sobic002G309600 Sobic002G309600 Sobic007G117400--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic007G117400--Sobic001G241200 Sobic007G117400--Sobic004G065100 Sobic007G117400--Sobic007G161000 Sobic003G280800 Sobic003G280800 Sobic007G117400--Sobic003G280800 Sobic007G117400--Sobic004G009600 Sobic001G154900 Sobic001G154900 Sobic007G117400--Sobic001G154900 Sobic009G040600 Sobic009G040600 Sobic007G117400--Sobic009G040600 Sobic005G008800 Sobic005G008800 Sobic007G117400--Sobic005G008800 Sobic008G192600 Sobic008G192600 Sobic007G126600--Sobic008G192600 Sobic007G126600--Sobic003G119000 Sobic002G404700 Sobic002G404700 Sobic007G126600--Sobic002G404700 Sobic007G126600--Sobic007G065400 Sobic009G026500 Sobic009G026500 Sobic007G126600--Sobic009G026500 Sobic002G006900 Sobic002G006900 Sobic007G126600--Sobic002G006900 Sobic003G108700 Sobic003G108700 Sobic007G126600--Sobic003G108700 Sobic001G347300 Sobic001G347300 Sobic007G126600--Sobic001G347300 Sobic007G126600--Sobic001G241200 Sobic001G542700 Sobic001G542700 Sobic001G107900--Sobic001G542700 Sobic001G107900--Sobic004G216500 Sobic009G138800 Sobic009G138800 Sobic001G107900--Sobic009G138800 Sobic001G107900--Sobic004G065100 Sobic001G107900--Sobic008G192600 Sobic001G014100 Sobic001G014100 Sobic001G107900--Sobic001G014100 Sobic001G107900--Sobic001G241200 Sobic001G107900--Sobic007G117400 Sobic002G277600 Sobic002G277600 Sobic001G107900--Sobic002G277600 Sobic006G251900--Sobic001G347300 Sobic006G251900--Sobic007G126600 Sobic009G083400 Sobic009G083400 Sobic006G251900--Sobic009G083400 Sobic006G251900--Sobic003G108700 Sobic001G511500 Sobic001G511500 Sobic006G251900--Sobic001G511500 Sobic006G251900--Sobic004G216500 Sobic002G127100 Sobic002G127100 Sobic006G251900--Sobic002G127100 Sobic006G251900--Sobic008G192600 Sobic003G038500 Sobic003G038500 Sobic006G251900--Sobic003G038500 Sobic008G054500 Sobic008G054500 Sobic004G216500--Sobic008G054500 Sobic004G216500--Sobic007G126600 Sobic004G216500--Sobic001G511500 Sobic004G216500--Sobic003G119000 Sobic004G216500--Sobic009G138800 Sobic004G216500--Sobic003G108700 Sobic004G216500--Sobic008G192600 Sobic007G167500 Sobic007G167500 Sobic004G216500--Sobic007G167500 Sobic004G216500--Sobic001G107900 Sobic004G048800 Sobic004G048800 Sobic003G012100--Sobic004G048800 Sobic002G299700 Sobic002G299700 Sobic003G012100--Sobic002G299700 Sobic003G360400 Sobic003G360400 Sobic003G012100--Sobic003G360400 Sobic008G113100 Sobic008G113100 Sobic003G012100--Sobic008G113100 Sobic001G363500 Sobic001G363500 Sobic003G012100--Sobic001G363500 Sobic001G026200 Sobic001G026200 Sobic003G012100--Sobic001G026200 Sobic010G065300 Sobic010G065300 Sobic003G012100--Sobic010G065300 Sobic003G012100--Sobic007G117400 Sobic003G012100--Sobic001G241200
Octagon: transcription factors


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