Gene annotation
Transcriptome id Sobic.010G121500.1,Sobic.010G121500.2
Synonym Sb10g010710
Functional annotation expressed protein
UniProt A0A1W0VSJ8 , C5Z8Z8
Pfam -
Panther DB PTHR12663 PTHR12663:SF0
NCBI CDD KOG1525; Sister chromatid cohesion complex Cohesin, subunit PDS5
KEGG Orthology K11267; sister chromatid cohesion protein PDS5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G47690 : binding
RAP-DB (Rice) LOC_Os06g17840.1 : expressed protein
MaizeGDB (Corn) Zm00025a050504 , Zm00025a042755
Brachypodium PNT76051 , KQK18576 , KQK18575
Barley HORVU0Hr1G039250.39 , HORVU0Hr1G039250.38 , HORVU0Hr1G039250.35 , HORVU0Hr1G039250.34 , HORVU0Hr1G039250.37 , HORVU0Hr1G039250.36 , HORVU0Hr1G039250.31 , HORVU0Hr1G039250.30 , HORVU0Hr1G039250.33 , HORVU0Hr1G039250.32 , HORVU0Hr1G039250.42 , HORVU0Hr1G039250.43 , HORVU0Hr1G039250.8 , HORVU0Hr1G039250.9 , HORVU0Hr1G039250.3 , HORVU0Hr1G039250.2 , HORVU0Hr1G039250.1 , HORVU0Hr1G039250.7 , HORVU0Hr1G039250.6 , HORVU0Hr1G039250.5 , HORVU0Hr1G039250.4 , HORVU0Hr1G039250.22 , HORVU0Hr1G039250.23 , HORVU0Hr1G039250.20 , HORVU0Hr1G039250.21 , HORVU0Hr1G039250.26 , HORVU0Hr1G039250.27 , HORVU0Hr1G039250.24 , HORVU0Hr1G039250.25 , HORVU0Hr1G039250.28 , HORVU0Hr1G039250.29 , HORVU0Hr1G039250.17 , HORVU0Hr1G039250.41 , HORVU0Hr1G039250.40 , HORVU0Hr1G039250.19 , HORVU0Hr1G039250.18 , HORVU0Hr1G039250.13 , HORVU0Hr1G039250.12 , HORVU0Hr1G039250.11 , HORVU0Hr1G039250.10 , HORVU0Hr1G039250.16 , HORVU0Hr1G039250.15 , HORVU0Hr1G039250.14
Wheat TraesCS7B02G122400 , TraesCS7B02G122400 , TraesCS7B02G122400 , TraesCS7B02G122400 , TraesCS7B02G122400 , TraesCS7B02G122400 , TraesCS7D02G217100 , TraesCS7D02G217100 , TraesCS7D02G217100 , TraesCS7D02G217100 , TraesCS7D02G217100 , TraesCS7D02G217100 , TraesCS7D02G217100 , TraesCS7A02G215200 , TraesCS7A02G215200 , TraesCS7A02G215200 , TraesCS7A02G215200 , TraesCS7A02G215200 , TraesCS2A02G517400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G223000 MIF4G domain containing protein, putative, expressed K14327: UPF2, regulator of nonsense transcripts 2
2 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
3 Sobic.003G241800 - -
4 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
5 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
6 Sobic.007G062800 SET domain containing protein, expressed -
7 Sobic.001G174900 DEK C terminal domain containing protein, expressed K17046: protein DEK
8 Sobic.010G010700 PHD-finger family protein, expressed -
9 Sobic.001G454500 potyvirus VPg interacting protein, putative, expressed -
10 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
11 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
12 Sobic.003G401600 expressed protein K12879: THO complex subunit 2
13 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
14 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
15 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
16 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
17 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.001G365900 PWWP domain containing protein, expressed -
19 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
20 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR


Gene co-expression network
sample Sobic010G121500 Sobic010G121500 Sobic004G223000 Sobic004G223000 Sobic010G121500--Sobic004G223000 Sobic010G206900 Sobic010G206900 Sobic010G121500--Sobic010G206900 Sobic003G241800 Sobic003G241800 Sobic010G121500--Sobic003G241800 Sobic001G230000 Sobic001G230000 Sobic010G121500--Sobic001G230000 Sobic003G389200 Sobic003G389200 Sobic010G121500--Sobic003G389200 Sobic007G062800 Sobic007G062800 Sobic010G121500--Sobic007G062800 Sobic001G174900 Sobic001G174900 Sobic010G121500--Sobic001G174900 Sobic010G010700 Sobic010G010700 Sobic010G121500--Sobic010G010700 Sobic001G454500 Sobic001G454500 Sobic010G121500--Sobic001G454500 Sobic004G223000--Sobic001G230000 Sobic004G223000--Sobic010G206900 Sobic003G186000 Sobic003G186000 Sobic004G223000--Sobic003G186000 Sobic002G316600 Sobic002G316600 Sobic004G223000--Sobic002G316600 Sobic001G527800 Sobic001G527800 Sobic004G223000--Sobic001G527800 Sobic004G223000--Sobic007G062800 Sobic004G276400 Sobic004G276400 Sobic004G223000--Sobic004G276400 Sobic004G223000--Sobic010G010700 Sobic001G370900 Sobic001G370900 Sobic004G223000--Sobic001G370900 Sobic010G206900--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic010G206900--Sobic001G365900 Sobic004G034900 Sobic004G034900 Sobic010G206900--Sobic004G034900 Sobic001G534700 Sobic001G534700 Sobic010G206900--Sobic001G534700 Sobic010G247800 Sobic010G247800 Sobic010G206900--Sobic010G247800 Sobic002G411600 Sobic002G411600 Sobic010G206900--Sobic002G411600 Sobic008G001200 Sobic008G001200 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic009G165700 Sobic009G165700 Sobic010G206900--Sobic009G165700 Sobic007G000100 Sobic007G000100 Sobic003G241800--Sobic007G000100 Sobic003G119000 Sobic003G119000 Sobic003G241800--Sobic003G119000 Sobic007G117400 Sobic007G117400 Sobic003G241800--Sobic007G117400 Sobic007G126600 Sobic007G126600 Sobic003G241800--Sobic007G126600 Sobic004G065100 Sobic004G065100 Sobic003G241800--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic003G241800--Sobic007G161000 Sobic004G039200 Sobic004G039200 Sobic003G241800--Sobic004G039200 Sobic005G207500 Sobic005G207500 Sobic003G241800--Sobic005G207500 Sobic007G065400 Sobic007G065400 Sobic003G241800--Sobic007G065400 Sobic001G230000--Sobic010G206900 Sobic003G155100 Sobic003G155100 Sobic001G230000--Sobic003G155100 Sobic001G230000--Sobic008G001200 Sobic001G230000--Sobic004G276400 Sobic001G230000--Sobic004G223000 Sobic009G256300 Sobic009G256300 Sobic001G230000--Sobic009G256300 Sobic001G230000--Sobic010G010700 Sobic001G298900 Sobic001G298900 Sobic001G230000--Sobic001G298900 Sobic008G044100 Sobic008G044100 Sobic001G230000--Sobic008G044100 Sobic003G389200--Sobic009G256300 Sobic003G389200--Sobic010G206900 Sobic003G360400 Sobic003G360400 Sobic003G389200--Sobic003G360400 Sobic010G112100 Sobic010G112100 Sobic003G389200--Sobic010G112100 Sobic003G389200--Sobic010G010700 Sobic003G389200--Sobic001G365900 Sobic001G540400 Sobic001G540400 Sobic003G389200--Sobic001G540400 Sobic007G105100 Sobic007G105100 Sobic003G389200--Sobic007G105100 Sobic003G389200--Sobic001G230000 Sobic007G062800--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic004G242400 Sobic004G242400 Sobic007G062800--Sobic004G242400 Sobic007G062800--Sobic004G034900 Sobic007G062800--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic007G062800--Sobic002G397500 Sobic001G174900--Sobic003G241800 Sobic001G174900--Sobic010G121500 Sobic004G264300 Sobic004G264300 Sobic001G174900--Sobic004G264300 Sobic001G174900--Sobic007G117400 Sobic001G174900--Sobic007G126600 Sobic001G107900 Sobic001G107900 Sobic001G174900--Sobic001G107900 Sobic006G251900 Sobic006G251900 Sobic001G174900--Sobic006G251900 Sobic004G216500 Sobic004G216500 Sobic001G174900--Sobic004G216500 Sobic003G012100 Sobic003G012100 Sobic001G174900--Sobic003G012100 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000 Sobic003G388100 Sobic003G388100 Sobic001G454500--Sobic003G388100 Sobic008G130100 Sobic008G130100 Sobic001G454500--Sobic008G130100 Sobic006G133900 Sobic006G133900 Sobic001G454500--Sobic006G133900 Sobic001G375100 Sobic001G375100 Sobic001G454500--Sobic001G375100 Sobic001G454500--Sobic001G365900 Sobic001G454500--Sobic008G001200 Sobic001G454500--Sobic010G010700 Sobic001G454500--Sobic003G155100 Sobic003G247500 Sobic003G247500 Sobic001G454500--Sobic003G247500
Octagon: transcription factors


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