Gene annotation
Transcriptome id Sobic.001G454500.1,Sobic.001G454500.3,Sobic.001G454500.2
Synonym Sb01g042710
Functional annotation potyvirus VPg interacting protein, putative, expressed
UniProt C5WSR1
Pfam PF16312 PF07227
Panther DB PTHR21736 PTHR21736:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63500 : Protein of unknown function (DUF1423)
RAP-DB (Rice) LOC_Os03g11890.1 : potyvirus VPg interacting protein, putative, expressed
MaizeGDB (Corn) Zm00025a053059
Brachypodium KQK22859 , KQK22863 , KQK22862 , KQK22861 , KQK22860
Barley HORVU4Hr1G067480.1 , HORVU4Hr1G067480.3 , HORVU4Hr1G067480.2 , HORVU4Hr1G067480.5 , HORVU4Hr1G067480.4 , HORVU4Hr1G067480.7 , HORVU4Hr1G067480.6
Wheat TraesCS4B02G243900 , TraesCS4B02G243900 , TraesCS4D02G243300 , TraesCS4A02G066400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G388100 expressed protein -
2 Sobic.008G130100 protein kinase family protein, putative, expressed -
3 Sobic.006G133900 NIN, putative, expressed -
4 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
5 Sobic.001G365900 PWWP domain containing protein, expressed -
6 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
7 Sobic.010G010700 PHD-finger family protein, expressed -
8 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
9 Sobic.003G247500 expressed protein -
10 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
11 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
12 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
13 Sobic.008G044100 expressed protein -
14 Sobic.010G123600 WW domain containing protein, expressed -
15 Sobic.002G346200 expressed protein -
16 Sobic.006G065600 expressed protein -
17 Sobic.005G149200 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
18 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
19 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
20 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G454500 Sobic001G454500 Sobic003G388100 Sobic003G388100 Sobic001G454500--Sobic003G388100 Sobic008G130100 Sobic008G130100 Sobic001G454500--Sobic008G130100 Sobic006G133900 Sobic006G133900 Sobic001G454500--Sobic006G133900 Sobic001G375100 Sobic001G375100 Sobic001G454500--Sobic001G375100 Sobic001G365900 Sobic001G365900 Sobic001G454500--Sobic001G365900 Sobic008G001200 Sobic008G001200 Sobic001G454500--Sobic008G001200 Sobic010G010700 Sobic010G010700 Sobic001G454500--Sobic010G010700 Sobic003G155100 Sobic003G155100 Sobic001G454500--Sobic003G155100 Sobic003G247500 Sobic003G247500 Sobic001G454500--Sobic003G247500 Sobic003G388100--Sobic008G001200 Sobic003G388100--Sobic001G454500 Sobic010G206900 Sobic010G206900 Sobic003G388100--Sobic010G206900 Sobic003G388100--Sobic001G365900 Sobic010G123600 Sobic010G123600 Sobic003G388100--Sobic010G123600 Sobic003G388100--Sobic003G155100 Sobic009G256300 Sobic009G256300 Sobic003G388100--Sobic009G256300 Sobic003G389200 Sobic003G389200 Sobic003G388100--Sobic003G389200 Sobic001G230000 Sobic001G230000 Sobic003G388100--Sobic001G230000 Sobic008G130100--Sobic001G365900 Sobic008G130100--Sobic001G454500 Sobic008G130100--Sobic006G133900 Sobic008G130100--Sobic010G010700 Sobic008G130100--Sobic003G155100 Sobic004G034900 Sobic004G034900 Sobic008G130100--Sobic004G034900 Sobic002G346200 Sobic002G346200 Sobic008G130100--Sobic002G346200 Sobic008G130100--Sobic010G206900 Sobic007G198300 Sobic007G198300 Sobic008G130100--Sobic007G198300 Sobic004G181600 Sobic004G181600 Sobic006G133900--Sobic004G181600 Sobic006G133900--Sobic001G454500 Sobic006G133900--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic006G133900--Sobic008G130100 Sobic006G065600 Sobic006G065600 Sobic006G133900--Sobic006G065600 Sobic003G191700 Sobic003G191700 Sobic006G133900--Sobic003G191700 Sobic001G375100--Sobic003G155100 Sobic001G375100--Sobic008G001200 Sobic005G149200 Sobic005G149200 Sobic001G375100--Sobic005G149200 Sobic001G375100--Sobic003G247500 Sobic001G375100--Sobic001G454500 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic001G375100--Sobic007G198300 Sobic005G001000 Sobic005G001000 Sobic001G375100--Sobic005G001000 Sobic001G365900--Sobic010G206900 Sobic001G534700 Sobic001G534700 Sobic001G365900--Sobic001G534700 Sobic001G289600 Sobic001G289600 Sobic001G365900--Sobic001G289600 Sobic001G365900--Sobic008G130100 Sobic002G411600 Sobic002G411600 Sobic001G365900--Sobic002G411600 Sobic001G365900--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic001G365900--Sobic009G191000 Sobic001G365900--Sobic004G034900 Sobic001G540400 Sobic001G540400 Sobic001G365900--Sobic001G540400 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic009G256400 Sobic009G256400 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic001G194200 Sobic001G194200 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic004G276400 Sobic004G276400 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic003G155100--Sobic001G230000 Sobic003G155100--Sobic001G375100 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic003G247500--Sobic001G194200 Sobic003G247500--Sobic008G001200 Sobic003G247500--Sobic001G375100 Sobic003G247500--Sobic010G010700 Sobic006G055200 Sobic006G055200 Sobic003G247500--Sobic006G055200 Sobic003G247500--Sobic001G454500 Sobic003G247500--Sobic010G123600 Sobic002G325300 Sobic002G325300 Sobic003G247500--Sobic002G325300 Sobic003G247500--Sobic005G001000
Octagon: transcription factors


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