Gene annotation
Transcriptome id Sobic.001G375100.1
Synonym Sb01g035620
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt C5X0M8
Pfam PF05496
Panther DB PTHR23074 PTHR23074:SF85
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT1G02890 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os03g22420.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a052394 , Zm00025a002409 , Zm00025a015408 , Zm00025a043267
Brachypodium KQK21732 , KQK14701 , KQK14700
Barley HORVU2Hr1G019730.12 , HORVU2Hr1G019730.13 , HORVU2Hr1G019730.10 , HORVU2Hr1G019730.11 , HORVU2Hr1G019730.16 , HORVU2Hr1G019730.17 , HORVU2Hr1G019730.14 , HORVU2Hr1G019730.15 , HORVU2Hr1G019730.8 , HORVU2Hr1G019730.9 , HORVU2Hr1G019730.1 , HORVU2Hr1G019730.2 , HORVU2Hr1G019730.3 , HORVU2Hr1G019730.4 , HORVU2Hr1G019730.5 , HORVU2Hr1G019730.6 , HORVU2Hr1G019730.7 , HORVU4Hr1G046420.18 , HORVU4Hr1G046420.19 , HORVU4Hr1G046420.14 , HORVU4Hr1G046420.15 , HORVU4Hr1G046420.17 , HORVU4Hr1G046420.10 , HORVU4Hr1G046420.11 , HORVU4Hr1G046420.12 , HORVU4Hr1G046420.13 , HORVU2Hr1G019730.18 , HORVU4Hr1G046420.21 , HORVU4Hr1G046420.20 , HORVU4Hr1G046420.22 , HORVU4Hr1G046420.6 , HORVU4Hr1G046420.7 , HORVU4Hr1G046420.4 , HORVU4Hr1G046420.5 , HORVU4Hr1G046420.2 , HORVU4Hr1G046420.3 , HORVU4Hr1G046420.8 , HORVU4Hr1G046420.9
Wheat TraesCS2D02G114500 , TraesCS2D02G114500 , TraesCS2D02G114500 , TraesCS4B02G155600 , TraesCS4B02G155600 , TraesCS4B02G155600 , TraesCS4B02G155600 , TraesCS2D02G114500 , TraesCS2D02G114500 , TraesCS4D02G168600 , TraesCS4D02G168600 , TraesCS4D02G168600 , TraesCS4D02G168600 , TraesCS2A02G113900 , TraesCS2A02G113900 , TraesCS2A02G113900 , TraesCS2A02G113900 , TraesCS2A02G113900 , TraesCS4D02G168600 , TraesCS4D02G168600 , TraesCS2B02G132900 , TraesCS2B02G132900 , TraesCS2B02G132900 , TraesCS2B02G132900 , TraesCS2B02G132900 , TraesCS4A02G142800 , TraesCS4A02G142800 , TraesCS4A02G142800 , TraesCS4A02G142800 , TraesCS4A02G142800 , TraesCS4A02G142800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
2 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
3 Sobic.005G149200 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
4 Sobic.003G247500 expressed protein -
5 Sobic.001G454500 potyvirus VPg interacting protein, putative, expressed -
6 Sobic.010G010700 PHD-finger family protein, expressed -
7 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
8 Sobic.007G198300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
9 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
10 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
11 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
12 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
13 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
14 Sobic.008G130100 protein kinase family protein, putative, expressed -
15 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
16 Sobic.001G373900 MYB family transcription factor, putative, expressed -
17 Sobic.006G133900 NIN, putative, expressed -
18 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
19 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor


Gene co-expression network
sample Sobic001G375100 Sobic001G375100 Sobic003G155100 Sobic003G155100 Sobic001G375100--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G375100--Sobic008G001200 Sobic005G149200 Sobic005G149200 Sobic001G375100--Sobic005G149200 Sobic003G247500 Sobic003G247500 Sobic001G375100--Sobic003G247500 Sobic001G454500 Sobic001G454500 Sobic001G375100--Sobic001G454500 Sobic010G010700 Sobic010G010700 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic007G198300 Sobic007G198300 Sobic001G375100--Sobic007G198300 Sobic005G001000 Sobic005G001000 Sobic001G375100--Sobic005G001000 Sobic003G155100--Sobic008G001200 Sobic006G219600 Sobic006G219600 Sobic003G155100--Sobic006G219600 Sobic010G206900 Sobic010G206900 Sobic003G155100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic003G155100--Sobic001G230000 Sobic003G155100--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic004G276400 Sobic004G276400 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic005G149200--Sobic001G375100 Sobic005G149200--Sobic006G219600 Sobic005G149200--Sobic001G454500 Sobic006G133900 Sobic006G133900 Sobic005G149200--Sobic006G133900 Sobic003G301900 Sobic003G301900 Sobic005G149200--Sobic003G301900 Sobic001G517800 Sobic001G517800 Sobic005G149200--Sobic001G517800 Sobic001G333800 Sobic001G333800 Sobic005G149200--Sobic001G333800 Sobic007G090403 Sobic007G090403 Sobic005G149200--Sobic007G090403 Sobic005G149200--Sobic003G155100 Sobic003G247500--Sobic001G194200 Sobic003G247500--Sobic008G001200 Sobic003G247500--Sobic001G375100 Sobic003G247500--Sobic010G010700 Sobic006G055200 Sobic006G055200 Sobic003G247500--Sobic006G055200 Sobic003G247500--Sobic001G454500 Sobic010G123600 Sobic010G123600 Sobic003G247500--Sobic010G123600 Sobic002G325300 Sobic002G325300 Sobic003G247500--Sobic002G325300 Sobic003G247500--Sobic005G001000 Sobic003G388100 Sobic003G388100 Sobic001G454500--Sobic003G388100 Sobic008G130100 Sobic008G130100 Sobic001G454500--Sobic008G130100 Sobic001G454500--Sobic006G133900 Sobic001G454500--Sobic001G375100 Sobic001G365900 Sobic001G365900 Sobic001G454500--Sobic001G365900 Sobic001G454500--Sobic008G001200 Sobic001G454500--Sobic010G010700 Sobic001G454500--Sobic003G155100 Sobic001G454500--Sobic003G247500 Sobic010G010700--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic009G191000 Sobic009G191000 Sobic002G008900--Sobic009G191000 Sobic002G411600 Sobic002G411600 Sobic002G008900--Sobic002G411600 Sobic002G008900--Sobic007G062800 Sobic003G422500 Sobic003G422500 Sobic002G008900--Sobic003G422500 Sobic002G008900--Sobic005G001000 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic002G008900--Sobic010G206900 Sobic009G053900 Sobic009G053900 Sobic002G008900--Sobic009G053900 Sobic007G198300--Sobic001G375100 Sobic007G198300--Sobic003G155100 Sobic007G198300--Sobic008G130100 Sobic003G191700 Sobic003G191700 Sobic007G198300--Sobic003G191700 Sobic009G038900 Sobic009G038900 Sobic007G198300--Sobic009G038900 Sobic003G229300 Sobic003G229300 Sobic007G198300--Sobic003G229300 Sobic007G198300--Sobic006G219600 Sobic007G198300--Sobic006G133900 Sobic001G381600 Sobic001G381600 Sobic007G198300--Sobic001G381600 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic005G001000--Sobic003G205200 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic005G001000--Sobic003G422500 Sobic005G001000--Sobic009G256400
Octagon: transcription factors


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