Gene annotation
Transcriptome id Sobic.010G167900.4,Sobic.010G167900.1,Sobic.010G167900.5
Synonym nPAP, PAP(IV), Sb10g022090
Functional annotation expressed protein
UniProt A0A1W0VTG0 , A0A1W0VTI8 , A0A1W0VTJ3
Pfam PF01909 PF04926 PF04928
Panther DB PTHR10682 PTHR10682:SF22
NCBI CDD -
KEGG Orthology K14376; poly(A) polymerase
Gene Ontology GO:0016779; nucleotidyltransferase activity GO:0003723RNA binding GO:0004652polynucleotide adenylyltransferase activity GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G32850 : nuclear poly(a) polymerase
RAP-DB (Rice) LOC_Os06g36360.2,LOC_Os06g36360.3,LOC_Os06g36360.1 : expressed protein
MaizeGDB (Corn) Zm00025a051039 , Zm00025a042311 , Zm00025a034532
Brachypodium KQK17996 , KQK17995 , KQK17994 , KQK17993 , KQK17992
Barley HORVU7Hr1G088370.22 , HORVU7Hr1G088370.23 , HORVU7Hr1G088370.20 , HORVU7Hr1G088370.21 , HORVU7Hr1G088370.18 , HORVU7Hr1G088370.13 , HORVU7Hr1G088370.7 , HORVU7Hr1G088370.6 , HORVU7Hr1G088370.5 , HORVU7Hr1G088370.4 , HORVU7Hr1G088370.3 , HORVU7Hr1G088370.2 , HORVU7Hr1G088370.1 , HORVU7Hr1G088370.9 , HORVU7Hr1G088370.8 , HORVU7Hr1G088370.19 , HORVU7Hr1G088370.17 , HORVU7Hr1G088370.16 , HORVU7Hr1G088370.14 , HORVU7Hr1G088370.12 , HORVU7Hr1G088370.11 , HORVU7Hr1G088370.10
Wheat TraesCS7B02G270600 , TraesCS7B02G270600 , TraesCS7B02G270600 , TraesCS7B02G270600 , TraesCS7D02G365600 , TraesCS7A02G357100 , TraesCS7A02G357100 , TraesCS7A02G357100 , TraesCS7A02G357100 , TraesCS7D02G365600 , TraesCS7D02G365600 , TraesCS7D02G365600 , TraesCS7D02G365600
Populus -


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cDNA sequences
Sobic.010G167900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
2 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -
3 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
4 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
5 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
6 Sobic.002G034600 zinc ion binding protein, putative, expressed -
7 Sobic.002G353600 expressed protein -
8 Sobic.002G382600 expressed protein -
9 Sobic.005G207500 AAA-type ATPase family protein, putative, expressed -
10 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
11 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
12 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
13 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
14 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
15 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
16 Sobic.003G411900 auxin response factor 2(PubMedID : 26465154)@auxin response factor 2(PubMedID : 26465154)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@"OsARF4(Ortholog in rice:Hu et al., 2018)"(PubMedID : 31659874)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@auxin response factor, putative, expressed -
17 Sobic.001G261501 - -
18 Sobic.007G146900 ARID/BRIGHT DNA-binding domain containing protein, expressed -
19 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
20 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -


Gene co-expression network
sample Sobic010G167900 Sobic010G167900 Sobic010G021500 Sobic010G021500 Sobic010G167900--Sobic010G021500 Sobic004G088200 Sobic004G088200 Sobic010G167900--Sobic004G088200 Sobic003G394300 Sobic003G394300 Sobic010G167900--Sobic003G394300 Sobic002G297200 Sobic002G297200 Sobic010G167900--Sobic002G297200 Sobic009G026500 Sobic009G026500 Sobic010G167900--Sobic009G026500 Sobic002G034600 Sobic002G034600 Sobic010G167900--Sobic002G034600 Sobic002G353600 Sobic002G353600 Sobic010G167900--Sobic002G353600 Sobic002G382600 Sobic002G382600 Sobic010G167900--Sobic002G382600 Sobic005G207500 Sobic005G207500 Sobic010G167900--Sobic005G207500 Sobic003G398700 Sobic003G398700 Sobic010G021500--Sobic003G398700 Sobic010G021500--Sobic010G167900 Sobic008G113100 Sobic008G113100 Sobic010G021500--Sobic008G113100 Sobic006G096900 Sobic006G096900 Sobic010G021500--Sobic006G096900 Sobic001G456900 Sobic001G456900 Sobic010G021500--Sobic001G456900 Sobic010G149200 Sobic010G149200 Sobic010G021500--Sobic010G149200 Sobic005G027400 Sobic005G027400 Sobic010G021500--Sobic005G027400 Sobic005G100700 Sobic005G100700 Sobic010G021500--Sobic005G100700 Sobic003G221900 Sobic003G221900 Sobic010G021500--Sobic003G221900 Sobic004G088200--Sobic003G394300 Sobic004G088200--Sobic010G167900 Sobic004G088200--Sobic005G207500 Sobic004G088200--Sobic006G096900 Sobic002G153700 Sobic002G153700 Sobic004G088200--Sobic002G153700 Sobic007G212300 Sobic007G212300 Sobic004G088200--Sobic007G212300 Sobic001G311500 Sobic001G311500 Sobic004G088200--Sobic001G311500 Sobic003G307000 Sobic003G307000 Sobic004G088200--Sobic003G307000 Sobic005G008800 Sobic005G008800 Sobic004G088200--Sobic005G008800 Sobic003G445400 Sobic003G445400 Sobic003G394300--Sobic003G445400 Sobic004G084300 Sobic004G084300 Sobic003G394300--Sobic004G084300 Sobic003G394300--Sobic003G307000 Sobic003G394300--Sobic004G088200 Sobic005G021500 Sobic005G021500 Sobic003G394300--Sobic005G021500 Sobic008G067600 Sobic008G067600 Sobic003G394300--Sobic008G067600 Sobic004G158200 Sobic004G158200 Sobic003G394300--Sobic004G158200 Sobic009G000500 Sobic009G000500 Sobic003G394300--Sobic009G000500 Sobic007G078600 Sobic007G078600 Sobic003G394300--Sobic007G078600 Sobic003G397800 Sobic003G397800 Sobic002G297200--Sobic003G397800 Sobic010G101800 Sobic010G101800 Sobic002G297200--Sobic010G101800 Sobic001G512700 Sobic001G512700 Sobic002G297200--Sobic001G512700 Sobic004G146500 Sobic004G146500 Sobic002G297200--Sobic004G146500 Sobic008G047800 Sobic008G047800 Sobic002G297200--Sobic008G047800 Sobic001G109800 Sobic001G109800 Sobic002G297200--Sobic001G109800 Sobic001G155000 Sobic001G155000 Sobic002G297200--Sobic001G155000 Sobic001G205200 Sobic001G205200 Sobic002G297200--Sobic001G205200 Sobic002G006900 Sobic002G006900 Sobic002G297200--Sobic002G006900 Sobic001G365900 Sobic001G365900 Sobic009G026500--Sobic001G365900 Sobic007G126600 Sobic007G126600 Sobic009G026500--Sobic007G126600 Sobic008G192600 Sobic008G192600 Sobic009G026500--Sobic008G192600 Sobic001G214300 Sobic001G214300 Sobic009G026500--Sobic001G214300 Sobic010G153700 Sobic010G153700 Sobic009G026500--Sobic010G153700 Sobic003G372700 Sobic003G372700 Sobic009G026500--Sobic003G372700 Sobic001G290100 Sobic001G290100 Sobic009G026500--Sobic001G290100 Sobic009G026500--Sobic002G006900 Sobic002G008900 Sobic002G008900 Sobic009G026500--Sobic002G008900 Sobic009G198100 Sobic009G198100 Sobic002G034600--Sobic009G198100 Sobic007G119200 Sobic007G119200 Sobic002G034600--Sobic007G119200 Sobic003G081000 Sobic003G081000 Sobic002G034600--Sobic003G081000 Sobic001G473600 Sobic001G473600 Sobic002G034600--Sobic001G473600 Sobic003G355000 Sobic003G355000 Sobic002G034600--Sobic003G355000 Sobic007G118200 Sobic007G118200 Sobic002G034600--Sobic007G118200 Sobic002G264200 Sobic002G264200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic010G236400 Sobic010G236400 Sobic002G034600--Sobic010G236400 Sobic002G353600--Sobic003G397800 Sobic007G146900 Sobic007G146900 Sobic002G353600--Sobic007G146900 Sobic002G353600--Sobic002G297200 Sobic002G353600--Sobic005G207500 Sobic002G353600--Sobic002G264200 Sobic003G059750 Sobic003G059750 Sobic002G353600--Sobic003G059750 Sobic001G206100 Sobic001G206100 Sobic002G353600--Sobic001G206100 Sobic004G257400 Sobic004G257400 Sobic002G353600--Sobic004G257400 Sobic002G353600--Sobic003G445400 Sobic002G105200 Sobic002G105200 Sobic002G382600--Sobic002G105200 Sobic002G382600--Sobic010G167900 Sobic009G113000 Sobic009G113000 Sobic002G382600--Sobic009G113000 Sobic004G237400 Sobic004G237400 Sobic002G382600--Sobic004G237400 Sobic010G264200 Sobic010G264200 Sobic002G382600--Sobic010G264200 Sobic004G331100 Sobic004G331100 Sobic002G382600--Sobic004G331100 Sobic001G279100 Sobic001G279100 Sobic002G382600--Sobic001G279100 Sobic002G382600--Sobic001G109800 Sobic001G436900 Sobic001G436900 Sobic002G382600--Sobic001G436900 Sobic005G207500--Sobic003G059750 Sobic005G207500--Sobic002G153700 Sobic007G103600 Sobic007G103600 Sobic005G207500--Sobic007G103600 Sobic003G119000 Sobic003G119000 Sobic005G207500--Sobic003G119000 Sobic008G009700 Sobic008G009700 Sobic005G207500--Sobic008G009700 Sobic005G207500--Sobic002G353600 Sobic010G069100 Sobic010G069100 Sobic005G207500--Sobic010G069100 Sobic002G071500 Sobic002G071500 Sobic005G207500--Sobic002G071500 Sobic001G026200 Sobic001G026200 Sobic005G207500--Sobic001G026200
Octagon: transcription factors


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