Gene annotation
Transcriptome id Sobic.002G382600.1
Synonym Sb02g039900
Functional annotation expressed protein
UniProt C5X2K5
Pfam PF10186
Panther DB PTHR21297 PTHR21297:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0010508; positive regulation of autophagy


Orthologs (automatic annotation)
TAIR AT4G08540 : DNA-directed RNA polymerase II protein
RAP-DB (Rice) LOC_Os07g43322.1 : expressed protein
MaizeGDB (Corn) Zm00025a047866 , Zm00025a015249 , Zm00025a048817
Brachypodium KQK15111
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G105200 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
2 Sobic.010G167900 expressed protein K14376: poly(A) polymerase
3 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
4 Sobic.004G237400 cullin, putative, expressed K03869: cullin 3
5 Sobic.010G264200 UPF0183 protein, putative, expressed -
6 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
7 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
8 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
9 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
10 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
12 Sobic.007G078600 YT521-B, putative, expressed -
13 Sobic.004G065000 expressed protein -
14 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
15 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
16 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
17 Sobic.001G498600 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
18 Sobic.002G380200 calmodulin-binding transcription activator, putative, expressed -
19 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
20 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1


Gene co-expression network
sample Sobic002G382600 Sobic002G382600 Sobic002G105200 Sobic002G105200 Sobic002G382600--Sobic002G105200 Sobic010G167900 Sobic010G167900 Sobic002G382600--Sobic010G167900 Sobic009G113000 Sobic009G113000 Sobic002G382600--Sobic009G113000 Sobic004G237400 Sobic004G237400 Sobic002G382600--Sobic004G237400 Sobic010G264200 Sobic010G264200 Sobic002G382600--Sobic010G264200 Sobic004G331100 Sobic004G331100 Sobic002G382600--Sobic004G331100 Sobic001G279100 Sobic001G279100 Sobic002G382600--Sobic001G279100 Sobic001G109800 Sobic001G109800 Sobic002G382600--Sobic001G109800 Sobic001G436900 Sobic001G436900 Sobic002G382600--Sobic001G436900 Sobic002G105200--Sobic002G382600 Sobic003G416400 Sobic003G416400 Sobic002G105200--Sobic003G416400 Sobic002G105200--Sobic004G237400 Sobic003G053800 Sobic003G053800 Sobic002G105200--Sobic003G053800 Sobic010G020300 Sobic010G020300 Sobic002G105200--Sobic010G020300 Sobic003G352200 Sobic003G352200 Sobic002G105200--Sobic003G352200 Sobic001G296900 Sobic001G296900 Sobic002G105200--Sobic001G296900 Sobic001G473600 Sobic001G473600 Sobic002G105200--Sobic001G473600 Sobic004G091200 Sobic004G091200 Sobic002G105200--Sobic004G091200 Sobic010G021500 Sobic010G021500 Sobic010G167900--Sobic010G021500 Sobic004G088200 Sobic004G088200 Sobic010G167900--Sobic004G088200 Sobic003G394300 Sobic003G394300 Sobic010G167900--Sobic003G394300 Sobic002G297200 Sobic002G297200 Sobic010G167900--Sobic002G297200 Sobic009G026500 Sobic009G026500 Sobic010G167900--Sobic009G026500 Sobic002G034600 Sobic002G034600 Sobic010G167900--Sobic002G034600 Sobic002G353600 Sobic002G353600 Sobic010G167900--Sobic002G353600 Sobic010G167900--Sobic002G382600 Sobic005G207500 Sobic005G207500 Sobic010G167900--Sobic005G207500 Sobic003G118200 Sobic003G118200 Sobic009G113000--Sobic003G118200 Sobic004G264400 Sobic004G264400 Sobic009G113000--Sobic004G264400 Sobic009G053900 Sobic009G053900 Sobic009G113000--Sobic009G053900 Sobic007G075400 Sobic007G075400 Sobic009G113000--Sobic007G075400 Sobic004G347400 Sobic004G347400 Sobic009G113000--Sobic004G347400 Sobic001G121200 Sobic001G121200 Sobic009G113000--Sobic001G121200 Sobic009G113000--Sobic004G331100 Sobic004G200200 Sobic004G200200 Sobic009G113000--Sobic004G200200 Sobic001G146800 Sobic001G146800 Sobic009G113000--Sobic001G146800 Sobic004G237400--Sobic002G105200 Sobic004G237400--Sobic009G113000 Sobic004G237400--Sobic003G352200 Sobic004G237400--Sobic002G382600 Sobic006G115600 Sobic006G115600 Sobic004G237400--Sobic006G115600 Sobic006G004500 Sobic006G004500 Sobic004G237400--Sobic006G004500 Sobic004G237400--Sobic004G264400 Sobic010G164000 Sobic010G164000 Sobic004G237400--Sobic010G164000 Sobic004G237400--Sobic001G473600 Sobic007G024700 Sobic007G024700 Sobic010G264200--Sobic007G024700 Sobic010G130200 Sobic010G130200 Sobic010G264200--Sobic010G130200 Sobic010G264200--Sobic002G382600 Sobic009G249200 Sobic009G249200 Sobic010G264200--Sobic009G249200 Sobic001G124200 Sobic001G124200 Sobic010G264200--Sobic001G124200 Sobic010G264200--Sobic010G020300 Sobic001G466700 Sobic001G466700 Sobic010G264200--Sobic001G466700 Sobic010G264200--Sobic001G436900 Sobic006G083600 Sobic006G083600 Sobic010G264200--Sobic006G083600 Sobic004G331100--Sobic007G075400 Sobic009G027300 Sobic009G027300 Sobic004G331100--Sobic009G027300 Sobic002G419800 Sobic002G419800 Sobic004G331100--Sobic002G419800 Sobic003G101400 Sobic003G101400 Sobic004G331100--Sobic003G101400 Sobic001G290100 Sobic001G290100 Sobic004G331100--Sobic001G290100 Sobic001G050200 Sobic001G050200 Sobic004G331100--Sobic001G050200 Sobic004G331100--Sobic004G347400 Sobic004G331100--Sobic003G118200 Sobic004G065000 Sobic004G065000 Sobic004G331100--Sobic004G065000 Sobic001G279100--Sobic002G382600 Sobic008G061100 Sobic008G061100 Sobic001G279100--Sobic008G061100 Sobic002G314900 Sobic002G314900 Sobic001G279100--Sobic002G314900 Sobic007G119200 Sobic007G119200 Sobic001G279100--Sobic007G119200 Sobic001G517500 Sobic001G517500 Sobic001G279100--Sobic001G517500 Sobic010G129600 Sobic010G129600 Sobic001G279100--Sobic010G129600 Sobic006G115466 Sobic006G115466 Sobic001G279100--Sobic006G115466 Sobic007G046200 Sobic007G046200 Sobic001G279100--Sobic007G046200 Sobic001G279100--Sobic001G436900 Sobic004G146500 Sobic004G146500 Sobic001G109800--Sobic004G146500 Sobic001G109800--Sobic004G264400 Sobic001G109800--Sobic002G297200 Sobic001G109800--Sobic007G119200 Sobic009G166300 Sobic009G166300 Sobic001G109800--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G109800--Sobic001G409600 Sobic002G071500 Sobic002G071500 Sobic001G109800--Sobic002G071500 Sobic001G220300 Sobic001G220300 Sobic001G109800--Sobic001G220300 Sobic001G109800--Sobic009G026500 Sobic001G436900--Sobic004G331100 Sobic003G320700 Sobic003G320700 Sobic001G436900--Sobic003G320700 Sobic001G436900--Sobic004G065000 Sobic006G271200 Sobic006G271200 Sobic001G436900--Sobic006G271200 Sobic006G204900 Sobic006G204900 Sobic001G436900--Sobic006G204900 Sobic001G436900--Sobic007G075400 Sobic001G436900--Sobic009G113000 Sobic001G436900--Sobic002G382600 Sobic001G436900--Sobic010G264200
Octagon: transcription factors


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