Gene annotation
Transcriptome id Sobic.001G436900.1,Sobic.001G436900.2
Synonym ATAPG9, Sb01g041090, APG9
Functional annotation autophagy protein 9, putative, expressed
UniProt C5WQY2 , Q3T8Z1
Pfam PF04109
Panther DB PTHR13038 PTHR13038:SF15
NCBI CDD -
KEGG Orthology K17907; autophagy-related protein 9
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G31260 : autophagy 9 (APG9)
RAP-DB (Rice) LOC_Os03g14380.1 : autophagy protein 9, putative, expressed
MaizeGDB (Corn) Zm00025a001567
Brachypodium KQK22575 , PNT77728
Barley HORVU0Hr1G008860.10 , HORVU0Hr1G008860.1 , HORVU0Hr1G008860.2 , HORVU0Hr1G008860.8 , HORVU0Hr1G008860.9 , HORVU0Hr1G008860.4 , HORVU0Hr1G008860.5 , HORVU0Hr1G008860.6 , HORVU0Hr1G008860.7 , HORVU0Hr1G008860.3
Wheat TraesCS4D02G224800 , TraesCS4B02G224200 , TraesCS4A02G079800
Populus -


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cDNA sequences
Sobic.001G436900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
2 Sobic.003G320700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G065000 expressed protein -
4 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
5 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
6 Sobic.007G075400 expressed protein -
7 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
8 Sobic.002G382600 expressed protein -
9 Sobic.010G264200 UPF0183 protein, putative, expressed -
10 Sobic.006G126500 OsFBX146 - F-box domain containing protein, expressed -
11 Sobic.002G346400 transmembrane protein 49, putative, expressed -
12 Sobic.006G115600 expressed protein -
13 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
14 Sobic.004G264400 TBC domain containing protein, expressed -
15 Sobic.003G089000 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
16 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
17 Sobic.003G101850 - -
18 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
19 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
20 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase


Gene co-expression network
sample Sobic001G436900 Sobic001G436900 Sobic004G331100 Sobic004G331100 Sobic001G436900--Sobic004G331100 Sobic003G320700 Sobic003G320700 Sobic001G436900--Sobic003G320700 Sobic004G065000 Sobic004G065000 Sobic001G436900--Sobic004G065000 Sobic006G271200 Sobic006G271200 Sobic001G436900--Sobic006G271200 Sobic006G204900 Sobic006G204900 Sobic001G436900--Sobic006G204900 Sobic007G075400 Sobic007G075400 Sobic001G436900--Sobic007G075400 Sobic009G113000 Sobic009G113000 Sobic001G436900--Sobic009G113000 Sobic002G382600 Sobic002G382600 Sobic001G436900--Sobic002G382600 Sobic010G264200 Sobic010G264200 Sobic001G436900--Sobic010G264200 Sobic004G331100--Sobic007G075400 Sobic009G027300 Sobic009G027300 Sobic004G331100--Sobic009G027300 Sobic002G419800 Sobic002G419800 Sobic004G331100--Sobic002G419800 Sobic003G101400 Sobic003G101400 Sobic004G331100--Sobic003G101400 Sobic001G290100 Sobic001G290100 Sobic004G331100--Sobic001G290100 Sobic001G050200 Sobic001G050200 Sobic004G331100--Sobic001G050200 Sobic004G347400 Sobic004G347400 Sobic004G331100--Sobic004G347400 Sobic003G118200 Sobic003G118200 Sobic004G331100--Sobic003G118200 Sobic004G331100--Sobic004G065000 Sobic003G301900 Sobic003G301900 Sobic003G320700--Sobic003G301900 Sobic006G104600 Sobic006G104600 Sobic003G320700--Sobic006G104600 Sobic001G517800 Sobic001G517800 Sobic003G320700--Sobic001G517800 Sobic003G320700--Sobic001G436900 Sobic003G320700--Sobic007G075400 Sobic003G320700--Sobic006G204900 Sobic006G087700 Sobic006G087700 Sobic003G320700--Sobic006G087700 Sobic003G322700 Sobic003G322700 Sobic003G320700--Sobic003G322700 Sobic009G193700 Sobic009G193700 Sobic003G320700--Sobic009G193700 Sobic004G065000--Sobic007G075400 Sobic004G065000--Sobic004G331100 Sobic009G133500 Sobic009G133500 Sobic004G065000--Sobic009G133500 Sobic007G163100 Sobic007G163100 Sobic004G065000--Sobic007G163100 Sobic007G133700 Sobic007G133700 Sobic004G065000--Sobic007G133700 Sobic010G139600 Sobic010G139600 Sobic004G065000--Sobic010G139600 Sobic001G313700 Sobic001G313700 Sobic004G065000--Sobic001G313700 Sobic001G273700 Sobic001G273700 Sobic004G065000--Sobic001G273700 Sobic001G085300 Sobic001G085300 Sobic004G065000--Sobic001G085300 Sobic001G003000 Sobic001G003000 Sobic006G271200--Sobic001G003000 Sobic006G237900 Sobic006G237900 Sobic006G271200--Sobic006G237900 Sobic009G126900 Sobic009G126900 Sobic006G271200--Sobic009G126900 Sobic010G130200 Sobic010G130200 Sobic006G271200--Sobic010G130200 Sobic001G089800 Sobic001G089800 Sobic006G271200--Sobic001G089800 Sobic010G043400 Sobic010G043400 Sobic006G271200--Sobic010G043400 Sobic004G351300 Sobic004G351300 Sobic006G271200--Sobic004G351300 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800 Sobic006G204900--Sobic003G322700 Sobic001G207400 Sobic001G207400 Sobic006G204900--Sobic001G207400 Sobic004G269200 Sobic004G269200 Sobic006G204900--Sobic004G269200 Sobic006G204900--Sobic009G133500 Sobic010G001500 Sobic010G001500 Sobic006G204900--Sobic010G001500 Sobic004G068400 Sobic004G068400 Sobic006G204900--Sobic004G068400 Sobic004G355000 Sobic004G355000 Sobic006G204900--Sobic004G355000 Sobic006G204900--Sobic003G320700 Sobic002G430000 Sobic002G430000 Sobic006G204900--Sobic002G430000 Sobic007G075400--Sobic010G139600 Sobic009G053900 Sobic009G053900 Sobic007G075400--Sobic009G053900 Sobic007G075400--Sobic004G331100 Sobic002G008900 Sobic002G008900 Sobic007G075400--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic007G075400--Sobic009G191000 Sobic002G146300 Sobic002G146300 Sobic007G075400--Sobic002G146300 Sobic003G422500 Sobic003G422500 Sobic007G075400--Sobic003G422500 Sobic003G313500 Sobic003G313500 Sobic007G075400--Sobic003G313500 Sobic007G075400--Sobic004G065000 Sobic009G113000--Sobic003G118200 Sobic004G264400 Sobic004G264400 Sobic009G113000--Sobic004G264400 Sobic009G113000--Sobic009G053900 Sobic009G113000--Sobic007G075400 Sobic009G113000--Sobic004G347400 Sobic001G121200 Sobic001G121200 Sobic009G113000--Sobic001G121200 Sobic009G113000--Sobic004G331100 Sobic004G200200 Sobic004G200200 Sobic009G113000--Sobic004G200200 Sobic001G146800 Sobic001G146800 Sobic009G113000--Sobic001G146800 Sobic002G105200 Sobic002G105200 Sobic002G382600--Sobic002G105200 Sobic010G167900 Sobic010G167900 Sobic002G382600--Sobic010G167900 Sobic002G382600--Sobic009G113000 Sobic004G237400 Sobic004G237400 Sobic002G382600--Sobic004G237400 Sobic002G382600--Sobic010G264200 Sobic002G382600--Sobic004G331100 Sobic001G279100 Sobic001G279100 Sobic002G382600--Sobic001G279100 Sobic001G109800 Sobic001G109800 Sobic002G382600--Sobic001G109800 Sobic002G382600--Sobic001G436900 Sobic007G024700 Sobic007G024700 Sobic010G264200--Sobic007G024700 Sobic010G264200--Sobic010G130200 Sobic010G264200--Sobic002G382600 Sobic009G249200 Sobic009G249200 Sobic010G264200--Sobic009G249200 Sobic001G124200 Sobic001G124200 Sobic010G264200--Sobic001G124200 Sobic010G020300 Sobic010G020300 Sobic010G264200--Sobic010G020300 Sobic001G466700 Sobic001G466700 Sobic010G264200--Sobic001G466700 Sobic010G264200--Sobic001G436900 Sobic006G083600 Sobic006G083600 Sobic010G264200--Sobic006G083600
Octagon: transcription factors


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