Gene annotation
Transcriptome id Sobic.002G346400.1
Synonym Sb02g036900
Functional annotation transmembrane protein 49, putative, expressed
UniProt C5XC98
Pfam PF09335
Panther DB PTHR10281 PTHR10281:SF44
NCBI CDD KOG1109; Vacuole membrane protein VMP1
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14950 : SNARE associated Golgi protein family
RAP-DB (Rice) LOC_Os07g38380.1 : transmembrane protein 49, putative, expressed
MaizeGDB (Corn) Zm00025a048453
Brachypodium KQK15632 , KQK15633 , KQK15634 , KQK15635 , KQK15636
Barley HORVU2Hr1G038330.10 , HORVU2Hr1G038330.5 , HORVU2Hr1G038330.4 , HORVU2Hr1G038330.7 , HORVU2Hr1G038330.6 , HORVU2Hr1G038330.1 , HORVU2Hr1G038330.3 , HORVU2Hr1G038330.2 , HORVU2Hr1G038330.9 , HORVU2Hr1G038330.8
Wheat TraesCS2A02G197700 , TraesCS2D02G205700 , TraesCS2B02G225100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G346400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
2 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
3 Sobic.008G144900 DUF221 domain containing protein, expressed -
4 Sobic.001G430400 Ser/Thr protein phosphatase family protein, putative, expressed -
5 Sobic.006G126500 OsFBX146 - F-box domain containing protein, expressed -
6 Sobic.003G089000 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
7 Sobic.003G246100 AMSH-like protease, putative, expressed K11866: STAMBP, STAM-binding protein
8 Sobic.007G000200 expressed protein -
9 Sobic.006G004500 arginase, putative, expressed K01476: E3.5.3.1, rocF, arginase
10 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
11 Sobic.006G115600 expressed protein -
12 Sobic.002G382600 expressed protein -
13 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
14 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
15 Sobic.007G028100 WD repeat-containing protein, putative, expressed -
16 Sobic.009G153000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin, putative, expressed K10355: actin, other eukaryote
17 Sobic.004G065000 expressed protein -
18 Sobic.001G217400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
19 Sobic.001G446850 - -
20 Sobic.009G208100 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit


Gene co-expression network
sample Sobic002G346400 Sobic002G346400 Sobic001G436900 Sobic001G436900 Sobic002G346400--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic002G346400--Sobic010G072800 Sobic008G144900 Sobic008G144900 Sobic002G346400--Sobic008G144900 Sobic001G430400 Sobic001G430400 Sobic002G346400--Sobic001G430400 Sobic006G126500 Sobic006G126500 Sobic002G346400--Sobic006G126500 Sobic003G089000 Sobic003G089000 Sobic002G346400--Sobic003G089000 Sobic003G246100 Sobic003G246100 Sobic002G346400--Sobic003G246100 Sobic007G000200 Sobic007G000200 Sobic002G346400--Sobic007G000200 Sobic006G004500 Sobic006G004500 Sobic002G346400--Sobic006G004500 Sobic004G331100 Sobic004G331100 Sobic001G436900--Sobic004G331100 Sobic003G320700 Sobic003G320700 Sobic001G436900--Sobic003G320700 Sobic004G065000 Sobic004G065000 Sobic001G436900--Sobic004G065000 Sobic006G271200 Sobic006G271200 Sobic001G436900--Sobic006G271200 Sobic006G204900 Sobic006G204900 Sobic001G436900--Sobic006G204900 Sobic007G075400 Sobic007G075400 Sobic001G436900--Sobic007G075400 Sobic009G113000 Sobic009G113000 Sobic001G436900--Sobic009G113000 Sobic002G382600 Sobic002G382600 Sobic001G436900--Sobic002G382600 Sobic010G264200 Sobic010G264200 Sobic001G436900--Sobic010G264200 Sobic001G375600 Sobic001G375600 Sobic010G072800--Sobic001G375600 Sobic010G072800--Sobic006G271200 Sobic002G430000 Sobic002G430000 Sobic010G072800--Sobic002G430000 Sobic001G207400 Sobic001G207400 Sobic010G072800--Sobic001G207400 Sobic004G209800 Sobic004G209800 Sobic010G072800--Sobic004G209800 Sobic010G072800--Sobic003G089000 Sobic007G060201 Sobic007G060201 Sobic010G072800--Sobic007G060201 Sobic010G072800--Sobic006G204900 Sobic004G269200 Sobic004G269200 Sobic010G072800--Sobic004G269200 Sobic008G144900--Sobic001G430400 Sobic008G144900--Sobic002G346400 Sobic006G032300 Sobic006G032300 Sobic008G144900--Sobic006G032300 Sobic001G446850 Sobic001G446850 Sobic008G144900--Sobic001G446850 Sobic010G089400 Sobic010G089400 Sobic008G144900--Sobic010G089400 Sobic008G060000 Sobic008G060000 Sobic008G144900--Sobic008G060000 Sobic009G074400 Sobic009G074400 Sobic008G144900--Sobic009G074400 Sobic003G388100 Sobic003G388100 Sobic008G144900--Sobic003G388100 Sobic008G039100 Sobic008G039100 Sobic008G144900--Sobic008G039100 Sobic002G256700 Sobic002G256700 Sobic001G430400--Sobic002G256700 Sobic001G430400--Sobic008G144900 Sobic008G087866 Sobic008G087866 Sobic001G430400--Sobic008G087866 Sobic001G191700 Sobic001G191700 Sobic001G430400--Sobic001G191700 Sobic001G117200 Sobic001G117200 Sobic001G430400--Sobic001G117200 Sobic001G430400--Sobic006G032300 Sobic001G430400--Sobic007G000200 Sobic001G277900 Sobic001G277900 Sobic001G430400--Sobic001G277900 Sobic002G371300 Sobic002G371300 Sobic001G430400--Sobic002G371300 Sobic007G172200 Sobic007G172200 Sobic006G126500--Sobic007G172200 Sobic006G126500--Sobic006G204900 Sobic006G126500--Sobic007G075400 Sobic010G072400 Sobic010G072400 Sobic006G126500--Sobic010G072400 Sobic001G370900 Sobic001G370900 Sobic006G126500--Sobic001G370900 Sobic006G126500--Sobic004G331100 Sobic007G088100 Sobic007G088100 Sobic006G126500--Sobic007G088100 Sobic006G126500--Sobic004G269200 Sobic006G126500--Sobic001G375600 Sobic004G177300 Sobic004G177300 Sobic003G089000--Sobic004G177300 Sobic003G089000--Sobic006G032300 Sobic002G335600 Sobic002G335600 Sobic003G089000--Sobic002G335600 Sobic003G089000--Sobic010G072800 Sobic001G273700 Sobic001G273700 Sobic003G089000--Sobic001G273700 Sobic002G142900 Sobic002G142900 Sobic003G089000--Sobic002G142900 Sobic001G263600 Sobic001G263600 Sobic003G089000--Sobic001G263600 Sobic003G089000--Sobic001G375600 Sobic003G089000--Sobic007G000200 Sobic006G115600 Sobic006G115600 Sobic003G246100--Sobic006G115600 Sobic003G246100--Sobic004G331100 Sobic003G246100--Sobic007G075400 Sobic001G050200 Sobic001G050200 Sobic003G246100--Sobic001G050200 Sobic001G107600 Sobic001G107600 Sobic003G246100--Sobic001G107600 Sobic003G246100--Sobic010G072800 Sobic010G139600 Sobic010G139600 Sobic003G246100--Sobic010G139600 Sobic010G227100 Sobic010G227100 Sobic003G246100--Sobic010G227100 Sobic003G118200 Sobic003G118200 Sobic003G246100--Sobic003G118200 Sobic007G000200--Sobic006G032300 Sobic003G046300 Sobic003G046300 Sobic007G000200--Sobic003G046300 Sobic008G002300 Sobic008G002300 Sobic007G000200--Sobic008G002300 Sobic002G245000 Sobic002G245000 Sobic007G000200--Sobic002G245000 Sobic007G000200--Sobic001G430400 Sobic002G164200 Sobic002G164200 Sobic007G000200--Sobic002G164200 Sobic007G000200--Sobic003G089000 Sobic001G542450 Sobic001G542450 Sobic007G000200--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic007G000200--Sobic006G088200 Sobic004G237400 Sobic004G237400 Sobic006G004500--Sobic004G237400 Sobic006G004500--Sobic001G436900 Sobic006G004500--Sobic003G089000 Sobic002G058500 Sobic002G058500 Sobic006G004500--Sobic002G058500 Sobic002G105200 Sobic002G105200 Sobic006G004500--Sobic002G105200 Sobic007G028100 Sobic007G028100 Sobic006G004500--Sobic007G028100 Sobic006G004500--Sobic007G000200 Sobic006G004500--Sobic009G113000 Sobic007G060000 Sobic007G060000 Sobic006G004500--Sobic007G060000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.