Gene annotation
Transcriptome id Sobic.003G246100.1
Synonym Sb03g030240, AMSH2
Functional annotation AMSH-like protease, putative, expressed
UniProt A0A1B6Q578
Pfam PF01398
Panther DB PTHR12947 PTHR12947:SF9
NCBI CDD -
KEGG Orthology K11866; STAMBP, STAM-binding protein
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G10600 : associated molecule with the SH3 domain of STAM 2
RAP-DB (Rice) LOC_Os01g47262.2 : AMSH-like protease, putative, expressed
MaizeGDB (Corn) Zm00025a038731
Brachypodium PNT72534 , KQK09043 , KQK09046 , KQK09044 , KQK09045
Barley HORVU3Hr1G059700.26 , HORVU3Hr1G059700.25 , HORVU3Hr1G059700.24 , HORVU3Hr1G059700.23 , HORVU3Hr1G059700.22 , HORVU3Hr1G059700.21 , HORVU3Hr1G059700.20 , HORVU3Hr1G059700.18 , HORVU3Hr1G059700.19 , HORVU3Hr1G059700.16 , HORVU3Hr1G059700.17 , HORVU3Hr1G059700.14 , HORVU3Hr1G059700.15 , HORVU3Hr1G059700.12 , HORVU3Hr1G059700.13 , HORVU3Hr1G059700.10 , HORVU3Hr1G059700.11 , HORVU3Hr1G059700.8 , HORVU3Hr1G059700.9 , HORVU3Hr1G059700.4 , HORVU3Hr1G059700.5 , HORVU3Hr1G059700.6 , HORVU3Hr1G059700.7 , HORVU3Hr1G059700.1 , HORVU3Hr1G059700.2 , HORVU3Hr1G059700.3
Wheat TraesCS3D02G240400 , TraesCS3B02G268400 , TraesCS3A02G240000 , TraesCS3A02G240000
Populus -


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cDNA sequences
Sobic.003G246100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G115600 expressed protein -
2 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
3 Sobic.007G075400 expressed protein -
4 Sobic.001G050200 expressed protein -
5 Sobic.001G107600 - K18328: lariat debranching enzyme
6 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
7 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
8 Sobic.010G227100 BTB/POZ domain containing protein, putative, expressed -
9 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
10 Sobic.001G037100 expressed protein K19026: spatacsin
11 Sobic.006G279200 expressed protein K11789: DCAF1, DDB1- and CUL4-associated factor 1
12 Sobic.004G264400 TBC domain containing protein, expressed -
13 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
14 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
15 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
16 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
17 Sobic.003G313500 MATH domain containing protein, expressed -
18 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
19 Sobic.008G087866 - -
20 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9


Gene co-expression network
sample Sobic003G246100 Sobic003G246100 Sobic006G115600 Sobic006G115600 Sobic003G246100--Sobic006G115600 Sobic004G331100 Sobic004G331100 Sobic003G246100--Sobic004G331100 Sobic007G075400 Sobic007G075400 Sobic003G246100--Sobic007G075400 Sobic001G050200 Sobic001G050200 Sobic003G246100--Sobic001G050200 Sobic001G107600 Sobic001G107600 Sobic003G246100--Sobic001G107600 Sobic010G072800 Sobic010G072800 Sobic003G246100--Sobic010G072800 Sobic010G139600 Sobic010G139600 Sobic003G246100--Sobic010G139600 Sobic010G227100 Sobic010G227100 Sobic003G246100--Sobic010G227100 Sobic003G118200 Sobic003G118200 Sobic003G246100--Sobic003G118200 Sobic006G115600--Sobic007G075400 Sobic002G045600 Sobic002G045600 Sobic006G115600--Sobic002G045600 Sobic004G264400 Sobic004G264400 Sobic006G115600--Sobic004G264400 Sobic006G115600--Sobic001G050200 Sobic006G115600--Sobic010G139600 Sobic006G115600--Sobic004G331100 Sobic007G163100 Sobic007G163100 Sobic006G115600--Sobic007G163100 Sobic006G115600--Sobic003G118200 Sobic010G278200 Sobic010G278200 Sobic006G115600--Sobic010G278200 Sobic004G331100--Sobic007G075400 Sobic009G027300 Sobic009G027300 Sobic004G331100--Sobic009G027300 Sobic002G419800 Sobic002G419800 Sobic004G331100--Sobic002G419800 Sobic003G101400 Sobic003G101400 Sobic004G331100--Sobic003G101400 Sobic001G290100 Sobic001G290100 Sobic004G331100--Sobic001G290100 Sobic004G331100--Sobic001G050200 Sobic004G347400 Sobic004G347400 Sobic004G331100--Sobic004G347400 Sobic004G331100--Sobic003G118200 Sobic004G065000 Sobic004G065000 Sobic004G331100--Sobic004G065000 Sobic007G075400--Sobic010G139600 Sobic009G053900 Sobic009G053900 Sobic007G075400--Sobic009G053900 Sobic007G075400--Sobic004G331100 Sobic002G008900 Sobic002G008900 Sobic007G075400--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic007G075400--Sobic009G191000 Sobic002G146300 Sobic002G146300 Sobic007G075400--Sobic002G146300 Sobic003G422500 Sobic003G422500 Sobic007G075400--Sobic003G422500 Sobic003G313500 Sobic003G313500 Sobic007G075400--Sobic003G313500 Sobic007G075400--Sobic004G065000 Sobic001G050200--Sobic002G419800 Sobic001G050200--Sobic003G422500 Sobic001G050200--Sobic009G027300 Sobic003G247300 Sobic003G247300 Sobic001G050200--Sobic003G247300 Sobic001G050200--Sobic009G191000 Sobic001G050200--Sobic007G075400 Sobic004G269200 Sobic004G269200 Sobic001G050200--Sobic004G269200 Sobic001G050200--Sobic004G331100 Sobic001G050200--Sobic003G101400 Sobic001G107600--Sobic001G050200 Sobic010G228400 Sobic010G228400 Sobic001G107600--Sobic010G228400 Sobic001G390800 Sobic001G390800 Sobic001G107600--Sobic001G390800 Sobic003G365300 Sobic003G365300 Sobic001G107600--Sobic003G365300 Sobic001G107600--Sobic006G115600 Sobic001G107600--Sobic004G264400 Sobic002G427050 Sobic002G427050 Sobic001G107600--Sobic002G427050 Sobic003G372500 Sobic003G372500 Sobic001G107600--Sobic003G372500 Sobic001G107600--Sobic010G227100 Sobic001G375600 Sobic001G375600 Sobic010G072800--Sobic001G375600 Sobic006G271200 Sobic006G271200 Sobic010G072800--Sobic006G271200 Sobic002G430000 Sobic002G430000 Sobic010G072800--Sobic002G430000 Sobic001G207400 Sobic001G207400 Sobic010G072800--Sobic001G207400 Sobic004G209800 Sobic004G209800 Sobic010G072800--Sobic004G209800 Sobic003G089000 Sobic003G089000 Sobic010G072800--Sobic003G089000 Sobic007G060201 Sobic007G060201 Sobic010G072800--Sobic007G060201 Sobic006G204900 Sobic006G204900 Sobic010G072800--Sobic006G204900 Sobic010G072800--Sobic004G269200 Sobic010G139600--Sobic007G075400 Sobic010G139600--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic010G139600--Sobic003G205200 Sobic008G098900 Sobic008G098900 Sobic010G139600--Sobic008G098900 Sobic010G139600--Sobic003G313500 Sobic005G001000 Sobic005G001000 Sobic010G139600--Sobic005G001000 Sobic001G194200 Sobic001G194200 Sobic010G139600--Sobic001G194200 Sobic010G139600--Sobic003G422500 Sobic001G370900 Sobic001G370900 Sobic010G139600--Sobic001G370900 Sobic002G243800 Sobic002G243800 Sobic010G227100--Sobic002G243800 Sobic002G383600 Sobic002G383600 Sobic010G227100--Sobic002G383600 Sobic010G227100--Sobic003G372500 Sobic006G275100 Sobic006G275100 Sobic010G227100--Sobic006G275100 Sobic007G190000 Sobic007G190000 Sobic010G227100--Sobic007G190000 Sobic010G227100--Sobic007G075400 Sobic010G227100--Sobic002G146300 Sobic009G074400 Sobic009G074400 Sobic010G227100--Sobic009G074400 Sobic010G227100--Sobic009G053900 Sobic003G118200--Sobic009G053900 Sobic003G118200--Sobic009G191000 Sobic009G113000 Sobic009G113000 Sobic003G118200--Sobic009G113000 Sobic003G118200--Sobic003G422500 Sobic003G118200--Sobic002G008900 Sobic003G118200--Sobic004G347400 Sobic003G118200--Sobic007G075400 Sobic001G451400 Sobic001G451400 Sobic003G118200--Sobic001G451400 Sobic003G118200--Sobic003G313500
Octagon: transcription factors


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