Gene annotation
Transcriptome id Sobic.001G037100.3,Sobic.001G037100.4,Sobic.001G037100.2,Sobic.001G037100.5
Synonym
Functional annotation expressed protein
UniProt A0A1B6QH63 , A0A1Z5S472
Pfam PF14649
Panther DB PTHR13650 PTHR13650:SF0
NCBI CDD -
KEGG Orthology K19026; spatacsin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G39420 : -
RAP-DB (Rice) LOC_Os01g08750.2,LOC_Os01g08750.1 : expressed protein
MaizeGDB (Corn) Zm00025a008776
Brachypodium PNT70093 , PNT70096 , KQK03054 , KQK03053 , KQK03052 , KQK03051 , PNT70097 , PNT70094 , PNT70095
Barley HORVU3Hr1G021050.24 , HORVU3Hr1G021050.25 , HORVU3Hr1G021050.22 , HORVU3Hr1G021050.23 , HORVU3Hr1G021050.20 , HORVU3Hr1G021050.21 , HORVU3Hr1G021050.7 , HORVU3Hr1G021050.6 , HORVU3Hr1G021050.5 , HORVU3Hr1G021050.4 , HORVU3Hr1G021050.3 , HORVU3Hr1G021050.2 , HORVU3Hr1G021050.1 , HORVU3Hr1G021050.9 , HORVU3Hr1G021050.8 , HORVU3Hr1G021050.19 , HORVU3Hr1G021050.18 , HORVU3Hr1G021050.17 , HORVU3Hr1G021050.16 , HORVU3Hr1G021050.15 , HORVU3Hr1G021050.14 , HORVU3Hr1G021050.13 , HORVU3Hr1G021050.12 , HORVU3Hr1G021050.11 , HORVU3Hr1G021050.10
Wheat TraesCS3B02G135100 , TraesCS3A02G116000 , TraesCS3D02G117900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G050600 expressed protein -
2 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
3 Sobic.007G062800 SET domain containing protein, expressed -
4 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
5 Sobic.001G540400 expressed protein -
6 Sobic.001G280900 expressed protein -
7 Sobic.007G098500 BIG, putative, expressed K10691: UBR4, E3 ubiquitin-protein ligase UBR4
8 Sobic.008G092600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
9 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
10 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
11 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
12 Sobic.006G040500 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
13 Sobic.002G397500 SAC3/GANP family protein, expressed -
14 Sobic.001G196500 plus-3 domain containing protein, putative, expressed -
15 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
16 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
17 Sobic.010G148932 - -
18 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
19 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
20 Sobic.002G419800 structural constituent of ribosome, putative, expressed -


Gene co-expression network
sample Sobic001G037100 Sobic001G037100 Sobic001G050600 Sobic001G050600 Sobic001G037100--Sobic001G050600 Sobic001G117200 Sobic001G117200 Sobic001G037100--Sobic001G117200 Sobic007G062800 Sobic007G062800 Sobic001G037100--Sobic007G062800 Sobic003G229500 Sobic003G229500 Sobic001G037100--Sobic003G229500 Sobic001G540400 Sobic001G540400 Sobic001G037100--Sobic001G540400 Sobic001G280900 Sobic001G280900 Sobic001G037100--Sobic001G280900 Sobic007G098500 Sobic007G098500 Sobic001G037100--Sobic007G098500 Sobic008G092600 Sobic008G092600 Sobic001G037100--Sobic008G092600 Sobic001G058700 Sobic001G058700 Sobic001G037100--Sobic001G058700 Sobic001G050600--Sobic007G098500 Sobic001G050600--Sobic001G037100 Sobic001G050600--Sobic001G058700 Sobic001G219900 Sobic001G219900 Sobic001G050600--Sobic001G219900 Sobic007G172400 Sobic007G172400 Sobic001G050600--Sobic007G172400 Sobic001G137000 Sobic001G137000 Sobic001G050600--Sobic001G137000 Sobic001G050600--Sobic001G280900 Sobic001G050600--Sobic008G092600 Sobic003G259100 Sobic003G259100 Sobic001G050600--Sobic003G259100 Sobic008G098900 Sobic008G098900 Sobic001G117200--Sobic008G098900 Sobic003G408600 Sobic003G408600 Sobic001G117200--Sobic003G408600 Sobic002G430000 Sobic002G430000 Sobic001G117200--Sobic002G430000 Sobic001G117200--Sobic001G540400 Sobic001G117200--Sobic001G137000 Sobic004G113400 Sobic004G113400 Sobic001G117200--Sobic004G113400 Sobic001G542500 Sobic001G542500 Sobic001G117200--Sobic001G542500 Sobic001G117200--Sobic001G058700 Sobic001G117200--Sobic008G092600 Sobic007G062800--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic010G010700 Sobic010G010700 Sobic007G062800--Sobic010G010700 Sobic004G242400 Sobic004G242400 Sobic007G062800--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic007G062800--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic007G062800--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic007G062800--Sobic002G397500 Sobic008G132600 Sobic008G132600 Sobic003G229500--Sobic008G132600 Sobic003G229500--Sobic007G062800 Sobic003G101400 Sobic003G101400 Sobic003G229500--Sobic003G101400 Sobic001G196500 Sobic001G196500 Sobic003G229500--Sobic001G196500 Sobic002G042600 Sobic002G042600 Sobic003G229500--Sobic002G042600 Sobic001G363500 Sobic001G363500 Sobic003G229500--Sobic001G363500 Sobic001G347500 Sobic001G347500 Sobic003G229500--Sobic001G347500 Sobic003G072200 Sobic003G072200 Sobic003G229500--Sobic003G072200 Sobic003G229500--Sobic001G540400 Sobic001G289600 Sobic001G289600 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic003G422500 Sobic003G422500 Sobic001G540400--Sobic003G422500 Sobic001G540400--Sobic002G397500 Sobic010G112100 Sobic010G112100 Sobic001G540400--Sobic010G112100 Sobic001G280900--Sobic001G540400 Sobic001G280900--Sobic005G112300 Sobic001G280900--Sobic002G397500 Sobic001G280900--Sobic003G408600 Sobic009G109200 Sobic009G109200 Sobic001G280900--Sobic009G109200 Sobic001G280900--Sobic005G008800 Sobic001G280900--Sobic007G062800 Sobic001G280900--Sobic001G058700 Sobic001G280900--Sobic001G050600 Sobic007G098500--Sobic008G092600 Sobic002G396500 Sobic002G396500 Sobic007G098500--Sobic002G396500 Sobic010G105200 Sobic010G105200 Sobic007G098500--Sobic010G105200 Sobic007G098500--Sobic003G072200 Sobic007G098500--Sobic001G050600 Sobic007G098500--Sobic001G137000 Sobic003G233400 Sobic003G233400 Sobic007G098500--Sobic003G233400 Sobic001G287500 Sobic001G287500 Sobic007G098500--Sobic001G287500 Sobic006G265200 Sobic006G265200 Sobic007G098500--Sobic006G265200 Sobic008G092600--Sobic007G098500 Sobic002G147600 Sobic002G147600 Sobic008G092600--Sobic002G147600 Sobic008G092600--Sobic001G137000 Sobic004G040500 Sobic004G040500 Sobic008G092600--Sobic004G040500 Sobic008G092600--Sobic003G072200 Sobic008G092600--Sobic008G098900 Sobic008G085300 Sobic008G085300 Sobic008G092600--Sobic008G085300 Sobic008G092600--Sobic003G233400 Sobic008G092600--Sobic001G117200 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G058700--Sobic001G050600 Sobic001G058700--Sobic007G062800 Sobic001G058700--Sobic001G540400 Sobic001G058700--Sobic005G008800 Sobic004G347400 Sobic004G347400 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G058700--Sobic001G219900
Octagon: transcription factors


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