Gene annotation
Transcriptome id Sobic.006G279200.1
Synonym Sb06g034000, DCAF1
Functional annotation expressed protein
UniProt C5YB39
Pfam -
Panther DB PTHR13129 PTHR13129:SF4
NCBI CDD -
KEGG Orthology K11789; DCAF1, DDB1- and CUL4-associated factor 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G31160 : DDB1-CUL4 associated factor 1
RAP-DB (Rice) LOC_Os04g59460.1 : expressed protein
MaizeGDB (Corn) Zm00025a057492 , Zm00025a010558
Brachypodium KQJ85494 , KQJ85493 , PNT62233 , KQJ85495 , PNT62234
Barley HORVU2Hr1G126010.8 , HORVU2Hr1G126010.4 , HORVU2Hr1G126010.5 , HORVU2Hr1G126010.6 , HORVU2Hr1G126010.7 , HORVU2Hr1G126010.1 , HORVU2Hr1G126010.2 , HORVU2Hr1G126010.3
Wheat TraesCS2B02G630100 , TraesCS2D02G576800 , TraesCS2A02G566600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G279200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G028600 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.001G037100 expressed protein K19026: spatacsin
3 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
4 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
5 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
6 Sobic.003G247300 protein of unknown function DUF1296 domain containing protein, expressed -
7 Sobic.003G246100 AMSH-like protease, putative, expressed K11866: STAMBP, STAM-binding protein
8 Sobic.001G050200 expressed protein -
9 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
10 Sobic.002G156000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
11 Sobic.006G149800 PPR repeat domain containing protein, putative, expressed -
12 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
13 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
14 Sobic.008G092600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
15 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
16 Sobic.004G004200 expressed protein -
17 Sobic.005G026200 HEAT repeat family protein, putative, expressed K11886: proteasome component ECM29
18 Sobic.001G196500 plus-3 domain containing protein, putative, expressed -
19 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
20 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -


Gene co-expression network
sample Sobic006G279200 Sobic006G279200 Sobic005G028600 Sobic005G028600 Sobic006G279200--Sobic005G028600 Sobic001G037100 Sobic001G037100 Sobic006G279200--Sobic001G037100 Sobic003G229500 Sobic003G229500 Sobic006G279200--Sobic003G229500 Sobic002G430000 Sobic002G430000 Sobic006G279200--Sobic002G430000 Sobic001G117200 Sobic001G117200 Sobic006G279200--Sobic001G117200 Sobic003G247300 Sobic003G247300 Sobic006G279200--Sobic003G247300 Sobic003G246100 Sobic003G246100 Sobic006G279200--Sobic003G246100 Sobic001G050200 Sobic001G050200 Sobic006G279200--Sobic001G050200 Sobic001G058700 Sobic001G058700 Sobic006G279200--Sobic001G058700 Sobic005G028600--Sobic001G058700 Sobic005G028600--Sobic003G247300 Sobic002G397500 Sobic002G397500 Sobic005G028600--Sobic002G397500 Sobic001G299700 Sobic001G299700 Sobic005G028600--Sobic001G299700 Sobic003G408600 Sobic003G408600 Sobic005G028600--Sobic003G408600 Sobic005G001000 Sobic005G001000 Sobic005G028600--Sobic005G001000 Sobic001G280900 Sobic001G280900 Sobic005G028600--Sobic001G280900 Sobic007G062800 Sobic007G062800 Sobic005G028600--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic005G028600--Sobic005G008800 Sobic001G050600 Sobic001G050600 Sobic001G037100--Sobic001G050600 Sobic001G037100--Sobic001G117200 Sobic001G037100--Sobic007G062800 Sobic001G037100--Sobic003G229500 Sobic001G540400 Sobic001G540400 Sobic001G037100--Sobic001G540400 Sobic001G037100--Sobic001G280900 Sobic007G098500 Sobic007G098500 Sobic001G037100--Sobic007G098500 Sobic008G092600 Sobic008G092600 Sobic001G037100--Sobic008G092600 Sobic001G037100--Sobic001G058700 Sobic008G132600 Sobic008G132600 Sobic003G229500--Sobic008G132600 Sobic003G229500--Sobic007G062800 Sobic003G101400 Sobic003G101400 Sobic003G229500--Sobic003G101400 Sobic001G196500 Sobic001G196500 Sobic003G229500--Sobic001G196500 Sobic002G042600 Sobic002G042600 Sobic003G229500--Sobic002G042600 Sobic001G363500 Sobic001G363500 Sobic003G229500--Sobic001G363500 Sobic001G347500 Sobic001G347500 Sobic003G229500--Sobic001G347500 Sobic003G072200 Sobic003G072200 Sobic003G229500--Sobic003G072200 Sobic003G229500--Sobic001G540400 Sobic001G207400 Sobic001G207400 Sobic002G430000--Sobic001G207400 Sobic002G430000--Sobic001G117200 Sobic004G355000 Sobic004G355000 Sobic002G430000--Sobic004G355000 Sobic008G098900 Sobic008G098900 Sobic002G430000--Sobic008G098900 Sobic001G016700 Sobic001G016700 Sobic002G430000--Sobic001G016700 Sobic004G113400 Sobic004G113400 Sobic002G430000--Sobic004G113400 Sobic010G139600 Sobic010G139600 Sobic002G430000--Sobic010G139600 Sobic002G430000--Sobic008G092600 Sobic003G110000 Sobic003G110000 Sobic002G430000--Sobic003G110000 Sobic001G117200--Sobic008G098900 Sobic001G117200--Sobic003G408600 Sobic001G117200--Sobic002G430000 Sobic001G117200--Sobic001G540400 Sobic001G137000 Sobic001G137000 Sobic001G117200--Sobic001G137000 Sobic001G117200--Sobic004G113400 Sobic001G542500 Sobic001G542500 Sobic001G117200--Sobic001G542500 Sobic001G117200--Sobic001G058700 Sobic001G117200--Sobic008G092600 Sobic003G247300--Sobic001G050200 Sobic003G313500 Sobic003G313500 Sobic003G247300--Sobic003G313500 Sobic003G247300--Sobic010G139600 Sobic003G247300--Sobic005G001000 Sobic003G247300--Sobic005G028600 Sobic002G008900 Sobic002G008900 Sobic003G247300--Sobic002G008900 Sobic003G205200 Sobic003G205200 Sobic003G247300--Sobic003G205200 Sobic004G269200 Sobic004G269200 Sobic003G247300--Sobic004G269200 Sobic009G191000 Sobic009G191000 Sobic003G247300--Sobic009G191000 Sobic006G115600 Sobic006G115600 Sobic003G246100--Sobic006G115600 Sobic004G331100 Sobic004G331100 Sobic003G246100--Sobic004G331100 Sobic007G075400 Sobic007G075400 Sobic003G246100--Sobic007G075400 Sobic003G246100--Sobic001G050200 Sobic001G107600 Sobic001G107600 Sobic003G246100--Sobic001G107600 Sobic010G072800 Sobic010G072800 Sobic003G246100--Sobic010G072800 Sobic003G246100--Sobic010G139600 Sobic010G227100 Sobic010G227100 Sobic003G246100--Sobic010G227100 Sobic003G118200 Sobic003G118200 Sobic003G246100--Sobic003G118200 Sobic002G419800 Sobic002G419800 Sobic001G050200--Sobic002G419800 Sobic003G422500 Sobic003G422500 Sobic001G050200--Sobic003G422500 Sobic009G027300 Sobic009G027300 Sobic001G050200--Sobic009G027300 Sobic001G050200--Sobic003G247300 Sobic001G050200--Sobic009G191000 Sobic001G050200--Sobic007G075400 Sobic001G050200--Sobic004G269200 Sobic001G050200--Sobic004G331100 Sobic001G050200--Sobic003G101400 Sobic001G058700--Sobic003G408600 Sobic007G172400 Sobic007G172400 Sobic001G058700--Sobic007G172400 Sobic001G058700--Sobic001G050600 Sobic001G058700--Sobic007G062800 Sobic001G058700--Sobic001G540400 Sobic001G058700--Sobic005G008800 Sobic004G347400 Sobic004G347400 Sobic001G058700--Sobic004G347400 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.