Gene annotation
Transcriptome id Sobic.002G156000.1,Sobic.002G156000.2
Synonym SbNHX6, Sodium Proton Antiporter 6, Sb02g019500, ATNHX6, NHX6
Functional annotation - (PubMedID : 29751546)
transporter, monovalent cation:proton antiporter-2 family, putative, expressed
UniProt A0A1B6QBK6 , A0A1B6QBK9
Pfam PF00999
Panther DB PTHR10110 PTHR10110:SF119
NCBI CDD KOG1965; Sodium/hydrogen exchanger protein
KEGG Orthology K14724; SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
Gene Ontology GO:0016021; integral component of membrane GO:0015299solute:proton antiporter activity GO:0006812cation transport


Orthologs (automatic annotation)
TAIR AT1G79610 : Na+/H+ antiporter 6
RAP-DB (Rice) LOC_Os09g11450.2 : transporter, monovalent cation:proton antiporter-2 family, putative, expressed
MaizeGDB (Corn) Zm00025a046281
Brachypodium KQJ89716
Barley HORVU5Hr1G053720.14 , HORVU5Hr1G053720.15 , HORVU5Hr1G053720.16 , HORVU5Hr1G053720.10 , HORVU5Hr1G053720.11 , HORVU5Hr1G053720.12 , HORVU5Hr1G053720.13 , HORVU5Hr1G053720.8 , HORVU5Hr1G053720.9 , HORVU5Hr1G053720.6 , HORVU5Hr1G053720.7 , HORVU5Hr1G053720.4 , HORVU5Hr1G053720.5 , HORVU5Hr1G053720.2 , HORVU5Hr1G053720.3 , HORVU5Hr1G053720.1
Wheat TraesCS5D02G180800 , TraesCS5A02G176100 , TraesCS5A02G176100 , TraesCS5A02G176100 , TraesCS5B02G173800 , TraesCS5B02G173800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G413900 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
2 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
3 Sobic.004G209800 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
4 Sobic.004G004200 expressed protein -
5 Sobic.004G261600 expressed protein -
6 Sobic.004G236200 SEC6, putative, expressed K06110: EXOC3, exocyst complex component 3
7 Sobic.004G016000 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
8 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
9 Sobic.001G281100 START domain containing protein, expressed -
10 Sobic.010G232600 solute carrier family 35 member F5, putative, expressed K15289: solute carrier family 35, member F5
11 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
12 Sobic.008G099800 expressed protein -
13 Sobic.001G056800 GTP binding protein, putative, expressed -
14 Sobic.007G200500 "Candidate orthologue to the wheat Pm40 gene, 5 Calcium-transporting ATPase plasma membrane-type"(PubMedID : 27755575)@"Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
15 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
16 Sobic.005G090300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
17 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
19 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1
20 Sobic.005G003300 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain


Gene co-expression network
sample Sobic002G156000 Sobic002G156000 Sobic001G413900 Sobic001G413900 Sobic002G156000--Sobic001G413900 Sobic010G072800 Sobic010G072800 Sobic002G156000--Sobic010G072800 Sobic004G209800 Sobic004G209800 Sobic002G156000--Sobic004G209800 Sobic004G004200 Sobic004G004200 Sobic002G156000--Sobic004G004200 Sobic004G261600 Sobic004G261600 Sobic002G156000--Sobic004G261600 Sobic004G236200 Sobic004G236200 Sobic002G156000--Sobic004G236200 Sobic004G016000 Sobic004G016000 Sobic002G156000--Sobic004G016000 Sobic002G430000 Sobic002G430000 Sobic002G156000--Sobic002G430000 Sobic001G281100 Sobic001G281100 Sobic002G156000--Sobic001G281100 Sobic001G534800 Sobic001G534800 Sobic001G413900--Sobic001G534800 Sobic001G413900--Sobic002G156000 Sobic001G413900--Sobic001G281100 Sobic004G002100 Sobic004G002100 Sobic001G413900--Sobic004G002100 Sobic001G413900--Sobic004G236200 Sobic001G413900--Sobic004G209800 Sobic001G065000 Sobic001G065000 Sobic001G413900--Sobic001G065000 Sobic001G056800 Sobic001G056800 Sobic001G413900--Sobic001G056800 Sobic003G229500 Sobic003G229500 Sobic001G413900--Sobic003G229500 Sobic001G375600 Sobic001G375600 Sobic010G072800--Sobic001G375600 Sobic006G271200 Sobic006G271200 Sobic010G072800--Sobic006G271200 Sobic010G072800--Sobic002G430000 Sobic001G207400 Sobic001G207400 Sobic010G072800--Sobic001G207400 Sobic010G072800--Sobic004G209800 Sobic003G089000 Sobic003G089000 Sobic010G072800--Sobic003G089000 Sobic007G060201 Sobic007G060201 Sobic010G072800--Sobic007G060201 Sobic006G204900 Sobic006G204900 Sobic010G072800--Sobic006G204900 Sobic004G269200 Sobic004G269200 Sobic010G072800--Sobic004G269200 Sobic004G209800--Sobic004G016000 Sobic004G178300 Sobic004G178300 Sobic004G209800--Sobic004G178300 Sobic004G209800--Sobic010G072800 Sobic001G137000 Sobic001G137000 Sobic004G209800--Sobic001G137000 Sobic004G209800--Sobic002G156000 Sobic001G007100 Sobic001G007100 Sobic004G209800--Sobic001G007100 Sobic004G223300 Sobic004G223300 Sobic004G209800--Sobic004G223300 Sobic004G209800--Sobic001G413900 Sobic004G209800--Sobic001G375600 Sobic004G004300 Sobic004G004300 Sobic004G004200--Sobic004G004300 Sobic004G004200--Sobic001G281100 Sobic004G004200--Sobic002G430000 Sobic004G004200--Sobic004G269200 Sobic001G101100 Sobic001G101100 Sobic004G004200--Sobic001G101100 Sobic001G251200 Sobic001G251200 Sobic004G004200--Sobic001G251200 Sobic004G004200--Sobic004G261600 Sobic002G270500 Sobic002G270500 Sobic004G004200--Sobic002G270500 Sobic003G126300 Sobic003G126300 Sobic004G004200--Sobic003G126300 Sobic004G228800 Sobic004G228800 Sobic004G261600--Sobic004G228800 Sobic006G126100 Sobic006G126100 Sobic004G261600--Sobic006G126100 Sobic003G209200 Sobic003G209200 Sobic004G261600--Sobic003G209200 Sobic003G104000 Sobic003G104000 Sobic004G261600--Sobic003G104000 Sobic007G005500 Sobic007G005500 Sobic004G261600--Sobic007G005500 Sobic004G261600--Sobic001G251200 Sobic001G415300 Sobic001G415300 Sobic004G261600--Sobic001G415300 Sobic004G261600--Sobic004G004300 Sobic008G099800 Sobic008G099800 Sobic004G261600--Sobic008G099800 Sobic003G270600 Sobic003G270600 Sobic004G236200--Sobic003G270600 Sobic004G236200--Sobic001G056800 Sobic006G077300 Sobic006G077300 Sobic004G236200--Sobic006G077300 Sobic004G236200--Sobic004G228800 Sobic006G203300 Sobic006G203300 Sobic004G236200--Sobic006G203300 Sobic003G427600 Sobic003G427600 Sobic004G236200--Sobic003G427600 Sobic003G394200 Sobic003G394200 Sobic004G236200--Sobic003G394200 Sobic007G205900 Sobic007G205900 Sobic004G236200--Sobic007G205900 Sobic004G236200--Sobic002G156000 Sobic004G351300 Sobic004G351300 Sobic004G016000--Sobic004G351300 Sobic004G016000--Sobic004G209800 Sobic004G016000--Sobic010G072800 Sobic004G016000--Sobic002G156000 Sobic005G059600 Sobic005G059600 Sobic004G016000--Sobic005G059600 Sobic007G075500 Sobic007G075500 Sobic004G016000--Sobic007G075500 Sobic004G016000--Sobic002G270500 Sobic009G133500 Sobic009G133500 Sobic004G016000--Sobic009G133500 Sobic004G016000--Sobic003G089000 Sobic002G430000--Sobic001G207400 Sobic001G117200 Sobic001G117200 Sobic002G430000--Sobic001G117200 Sobic004G355000 Sobic004G355000 Sobic002G430000--Sobic004G355000 Sobic008G098900 Sobic008G098900 Sobic002G430000--Sobic008G098900 Sobic001G016700 Sobic001G016700 Sobic002G430000--Sobic001G016700 Sobic004G113400 Sobic004G113400 Sobic002G430000--Sobic004G113400 Sobic010G139600 Sobic010G139600 Sobic002G430000--Sobic010G139600 Sobic008G092600 Sobic008G092600 Sobic002G430000--Sobic008G092600 Sobic003G110000 Sobic003G110000 Sobic002G430000--Sobic003G110000 Sobic001G281100--Sobic001G534800 Sobic001G281100--Sobic004G004300 Sobic001G281100--Sobic001G065000 Sobic005G026200 Sobic005G026200 Sobic001G281100--Sobic005G026200 Sobic001G281100--Sobic008G099800 Sobic001G281100--Sobic003G229500 Sobic006G012500 Sobic006G012500 Sobic001G281100--Sobic006G012500 Sobic004G072100 Sobic004G072100 Sobic001G281100--Sobic004G072100 Sobic010G275500 Sobic010G275500 Sobic001G281100--Sobic010G275500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.