Gene annotation
Transcriptome id Sobic.001G413900.1
Synonym Sb01g038990, ATECA4, ECA4
Functional annotation "Ca ATPase, IIB type" (PubMedID : 22196357)
calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed
UniProt C5WP97
Pfam PF00690 PF13246 PF00689 PF00122
Panther DB PTHR24093 PTHR24093:SF289
NCBI CDD -
KEGG Orthology K01537; P-type Ca2+ transporter type 2C
Gene Ontology GO:0000166; nucleotide binding


Orthologs (automatic annotation)
TAIR AT1G07670 : endomembrane-type CA-ATPase 4
RAP-DB (Rice) LOC_Os03g17310.1 : calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed
MaizeGDB (Corn) Zm00025a010630 , Zm00025a052719 , Zm00025a053797 , Zm00025a001900
Brachypodium KQK22262
Barley HORVU4Hr1G058210.10 , HORVU4Hr1G058210.8 , HORVU4Hr1G058210.9 , HORVU4Hr1G058210.2 , HORVU4Hr1G058210.3 , HORVU4Hr1G058210.1 , HORVU4Hr1G058210.6 , HORVU4Hr1G058210.7 , HORVU4Hr1G058210.4 , HORVU4Hr1G058210.5
Wheat TraesCS4D02G202200 , TraesCS4D02G202200 , TraesCS4D02G202200 , TraesCS4A02G103000 , TraesCS4A02G103000 , TraesCS4B02G201500 , TraesCS4B02G201500 , TraesCS4B02G201500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
2 Sobic.002G156000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
3 Sobic.001G281100 START domain containing protein, expressed -
4 Sobic.004G002100 G-protein alpha subunit, putative, expressed -
5 Sobic.004G236200 SEC6, putative, expressed K06110: EXOC3, exocyst complex component 3
6 Sobic.004G209800 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
7 Sobic.001G065000 expressed protein -
8 Sobic.001G056800 GTP binding protein, putative, expressed -
9 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
10 Sobic.003G427600 villin protein, putative, expressed -
11 Sobic.001G347500 expressed protein -
12 Sobic.009G243800 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
13 Sobic.003G036800 WD domain, G-beta repeat domain containing protein, expressed K10260: FBXW7, F-box and WD-40 domain protein 7
14 Sobic.008G099800 expressed protein -
15 Sobic.004G002400 expressed protein -
16 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1
17 Sobic.001G415300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
18 Sobic.008G132600 expressed protein -
19 Sobic.010G232600 solute carrier family 35 member F5, putative, expressed K15289: solute carrier family 35, member F5
20 Sobic.002G270500 UBX domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G413900 Sobic001G413900 Sobic001G534800 Sobic001G534800 Sobic001G413900--Sobic001G534800 Sobic002G156000 Sobic002G156000 Sobic001G413900--Sobic002G156000 Sobic001G281100 Sobic001G281100 Sobic001G413900--Sobic001G281100 Sobic004G002100 Sobic004G002100 Sobic001G413900--Sobic004G002100 Sobic004G236200 Sobic004G236200 Sobic001G413900--Sobic004G236200 Sobic004G209800 Sobic004G209800 Sobic001G413900--Sobic004G209800 Sobic001G065000 Sobic001G065000 Sobic001G413900--Sobic001G065000 Sobic001G056800 Sobic001G056800 Sobic001G413900--Sobic001G056800 Sobic003G229500 Sobic003G229500 Sobic001G413900--Sobic003G229500 Sobic001G534800--Sobic001G281100 Sobic008G099800 Sobic008G099800 Sobic001G534800--Sobic008G099800 Sobic004G004300 Sobic004G004300 Sobic001G534800--Sobic004G004300 Sobic004G135400 Sobic004G135400 Sobic001G534800--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic001G534800--Sobic005G003300 Sobic005G026200 Sobic005G026200 Sobic001G534800--Sobic005G026200 Sobic006G012500 Sobic006G012500 Sobic001G534800--Sobic006G012500 Sobic004G113400 Sobic004G113400 Sobic001G534800--Sobic004G113400 Sobic001G534800--Sobic001G065000 Sobic002G156000--Sobic001G413900 Sobic010G072800 Sobic010G072800 Sobic002G156000--Sobic010G072800 Sobic002G156000--Sobic004G209800 Sobic004G004200 Sobic004G004200 Sobic002G156000--Sobic004G004200 Sobic004G261600 Sobic004G261600 Sobic002G156000--Sobic004G261600 Sobic002G156000--Sobic004G236200 Sobic004G016000 Sobic004G016000 Sobic002G156000--Sobic004G016000 Sobic002G430000 Sobic002G430000 Sobic002G156000--Sobic002G430000 Sobic002G156000--Sobic001G281100 Sobic001G281100--Sobic001G534800 Sobic001G281100--Sobic004G004300 Sobic001G281100--Sobic001G065000 Sobic001G281100--Sobic005G026200 Sobic001G281100--Sobic008G099800 Sobic001G281100--Sobic003G229500 Sobic001G281100--Sobic006G012500 Sobic004G072100 Sobic004G072100 Sobic001G281100--Sobic004G072100 Sobic010G275500 Sobic010G275500 Sobic001G281100--Sobic010G275500 Sobic002G137400 Sobic002G137400 Sobic004G002100--Sobic002G137400 Sobic004G002100--Sobic001G534800 Sobic002G031100 Sobic002G031100 Sobic004G002100--Sobic002G031100 Sobic001G415300 Sobic001G415300 Sobic004G002100--Sobic001G415300 Sobic004G002100--Sobic001G281100 Sobic004G002400 Sobic004G002400 Sobic004G002100--Sobic004G002400 Sobic004G002100--Sobic001G413900 Sobic006G126100 Sobic006G126100 Sobic004G002100--Sobic006G126100 Sobic004G002100--Sobic004G004300 Sobic003G270600 Sobic003G270600 Sobic004G236200--Sobic003G270600 Sobic004G236200--Sobic001G056800 Sobic006G077300 Sobic006G077300 Sobic004G236200--Sobic006G077300 Sobic004G228800 Sobic004G228800 Sobic004G236200--Sobic004G228800 Sobic006G203300 Sobic006G203300 Sobic004G236200--Sobic006G203300 Sobic003G427600 Sobic003G427600 Sobic004G236200--Sobic003G427600 Sobic003G394200 Sobic003G394200 Sobic004G236200--Sobic003G394200 Sobic007G205900 Sobic007G205900 Sobic004G236200--Sobic007G205900 Sobic004G236200--Sobic002G156000 Sobic004G209800--Sobic004G016000 Sobic004G178300 Sobic004G178300 Sobic004G209800--Sobic004G178300 Sobic004G209800--Sobic010G072800 Sobic001G137000 Sobic001G137000 Sobic004G209800--Sobic001G137000 Sobic004G209800--Sobic002G156000 Sobic001G007100 Sobic001G007100 Sobic004G209800--Sobic001G007100 Sobic004G223300 Sobic004G223300 Sobic004G209800--Sobic004G223300 Sobic004G209800--Sobic001G413900 Sobic001G375600 Sobic001G375600 Sobic004G209800--Sobic001G375600 Sobic001G114000 Sobic001G114000 Sobic001G065000--Sobic001G114000 Sobic001G065000--Sobic001G281100 Sobic001G065000--Sobic006G012500 Sobic001G065000--Sobic001G534800 Sobic005G118600 Sobic005G118600 Sobic001G065000--Sobic005G118600 Sobic001G065000--Sobic008G099800 Sobic003G093800 Sobic003G093800 Sobic001G065000--Sobic003G093800 Sobic006G037700 Sobic006G037700 Sobic001G065000--Sobic006G037700 Sobic001G065000--Sobic003G229500 Sobic001G056800--Sobic006G077300 Sobic005G090300 Sobic005G090300 Sobic001G056800--Sobic005G090300 Sobic001G056800--Sobic004G236200 Sobic003G209200 Sobic003G209200 Sobic001G056800--Sobic003G209200 Sobic006G021700 Sobic006G021700 Sobic001G056800--Sobic006G021700 Sobic002G340900 Sobic002G340900 Sobic001G056800--Sobic002G340900 Sobic001G056800--Sobic003G394200 Sobic001G056800--Sobic006G203300 Sobic001G056800--Sobic002G156000 Sobic008G132600 Sobic008G132600 Sobic003G229500--Sobic008G132600 Sobic007G062800 Sobic007G062800 Sobic003G229500--Sobic007G062800 Sobic003G101400 Sobic003G101400 Sobic003G229500--Sobic003G101400 Sobic001G196500 Sobic001G196500 Sobic003G229500--Sobic001G196500 Sobic002G042600 Sobic002G042600 Sobic003G229500--Sobic002G042600 Sobic001G363500 Sobic001G363500 Sobic003G229500--Sobic001G363500 Sobic001G347500 Sobic001G347500 Sobic003G229500--Sobic001G347500 Sobic003G072200 Sobic003G072200 Sobic003G229500--Sobic003G072200 Sobic001G540400 Sobic001G540400 Sobic003G229500--Sobic001G540400
Octagon: transcription factors


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