Gene annotation
Transcriptome id Sobic.001G056800.1
Synonym Sb01g005180
Functional annotation GTP binding protein, putative, expressed
UniProt C5WX71
Pfam PF02841 PF02263
Panther DB PTHR10751 PTHR10751:SF38
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005525; GTP binding GO:0003924GTPase activity


Orthologs (automatic annotation)
TAIR AT2G38840 : Guanylate-binding family protein
RAP-DB (Rice) LOC_Os03g58240.1 : GTP binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a045185 , Zm00025a016572 , Zm00025a008565
Brachypodium PNT76902 , PNT76903 , PNT76906 , PNT76907 , PNT76904 , PNT76905 , KQK20582 , KQK20583 , KQK12705
Barley HORVU5Hr1G109660.22 , HORVU5Hr1G109660.23 , HORVU5Hr1G109660.20 , HORVU5Hr1G109660.21 , HORVU5Hr1G109660.26 , HORVU5Hr1G109660.24 , HORVU6Hr1G014870.1 , HORVU6Hr1G014870.2 , HORVU5Hr1G106140.17 , HORVU5Hr1G106140.16 , HORVU5Hr1G106140.15 , HORVU5Hr1G106140.13 , HORVU5Hr1G106140.12 , HORVU5Hr1G106140.11 , HORVU5Hr1G106140.10 , HORVU5Hr1G106140.19 , HORVU5Hr1G106140.18 , HORVU5Hr1G106140.9 , HORVU5Hr1G106140.8 , HORVU5Hr1G106140.7 , HORVU5Hr1G106140.6 , HORVU5Hr1G106140.5 , HORVU5Hr1G106140.4 , HORVU5Hr1G106140.3 , HORVU5Hr1G106140.2 , HORVU5Hr1G106140.1 , HORVU5Hr1G109660.25 , HORVU5Hr1G106140.31 , HORVU5Hr1G106140.30 , HORVU5Hr1G106140.33 , HORVU5Hr1G106140.32 , HORVU5Hr1G106140.35 , HORVU5Hr1G106140.34 , HORVU5Hr1G106140.28 , HORVU5Hr1G106140.29 , HORVU5Hr1G106140.26 , HORVU5Hr1G106140.27 , HORVU5Hr1G106140.24 , HORVU5Hr1G106140.25 , HORVU5Hr1G106140.22 , HORVU5Hr1G106140.23 , HORVU5Hr1G106140.20 , HORVU5Hr1G106140.21 , HORVU5Hr1G109660.13 , HORVU5Hr1G109660.12 , HORVU5Hr1G109660.11 , HORVU5Hr1G109660.10 , HORVU5Hr1G109660.17 , HORVU5Hr1G109660.16 , HORVU5Hr1G109660.15 , HORVU5Hr1G109660.14 , HORVU5Hr1G109660.19 , HORVU5Hr1G109660.18 , HORVU5Hr1G109660.3 , HORVU5Hr1G109660.2 , HORVU5Hr1G109660.1 , HORVU5Hr1G109660.7 , HORVU5Hr1G109660.6 , HORVU5Hr1G109660.5 , HORVU5Hr1G109660.4 , HORVU5Hr1G109660.9 , HORVU5Hr1G109660.8 , HORVU5Hr1G106140.14
Wheat TraesCS5B02G444000 , TraesCS5B02G466100 , TraesCS5A02G440300 , TraesCS5A02G457100 , TraesCS5D02G447400 , TraesCS5D02G467800
Populus PNT37999 , PNT47807 , PNT38001 , PNT38000 , PNT38002


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cDNA sequences
Sobic.001G056800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
2 Sobic.005G090300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
3 Sobic.004G236200 SEC6, putative, expressed K06110: EXOC3, exocyst complex component 3
4 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
5 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
6 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
7 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
8 Sobic.006G203300 GPR89A, putative, expressed -
9 Sobic.002G156000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
10 Sobic.005G177700 transmembrane protein 49, putative, expressed -
11 Sobic.001G413900 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
12 Sobic.006G260500 expressed protein -
13 Sobic.001G255800 CPuORF15 - conserved peptide uORF-containing transcript, expressed -
14 Sobic.001G308400 expressed protein -
15 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
16 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
17 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
18 Sobic.003G114400 expressed protein K05288: GPI ethanolamine phosphate transferase 3 subunit O
19 Sobic.004G223300 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
20 Sobic.006G128100 lipase, putative, expressed -


Gene co-expression network
sample Sobic001G056800 Sobic001G056800 Sobic006G077300 Sobic006G077300 Sobic001G056800--Sobic006G077300 Sobic005G090300 Sobic005G090300 Sobic001G056800--Sobic005G090300 Sobic004G236200 Sobic004G236200 Sobic001G056800--Sobic004G236200 Sobic003G209200 Sobic003G209200 Sobic001G056800--Sobic003G209200 Sobic006G021700 Sobic006G021700 Sobic001G056800--Sobic006G021700 Sobic002G340900 Sobic002G340900 Sobic001G056800--Sobic002G340900 Sobic003G394200 Sobic003G394200 Sobic001G056800--Sobic003G394200 Sobic006G203300 Sobic006G203300 Sobic001G056800--Sobic006G203300 Sobic002G156000 Sobic002G156000 Sobic001G056800--Sobic002G156000 Sobic006G260500 Sobic006G260500 Sobic006G077300--Sobic006G260500 Sobic006G077300--Sobic006G021700 Sobic006G077300--Sobic003G209200 Sobic006G077300--Sobic001G056800 Sobic002G401500 Sobic002G401500 Sobic006G077300--Sobic002G401500 Sobic003G114400 Sobic003G114400 Sobic006G077300--Sobic003G114400 Sobic007G005500 Sobic007G005500 Sobic006G077300--Sobic007G005500 Sobic005G062200 Sobic005G062200 Sobic006G077300--Sobic005G062200 Sobic002G042600 Sobic002G042600 Sobic006G077300--Sobic002G042600 Sobic005G090300--Sobic001G056800 Sobic005G090300--Sobic005G062200 Sobic005G090300--Sobic003G114400 Sobic001G263600 Sobic001G263600 Sobic005G090300--Sobic001G263600 Sobic004G223300 Sobic004G223300 Sobic005G090300--Sobic004G223300 Sobic002G301100 Sobic002G301100 Sobic005G090300--Sobic002G301100 Sobic002G241600 Sobic002G241600 Sobic005G090300--Sobic002G241600 Sobic008G088872 Sobic008G088872 Sobic005G090300--Sobic008G088872 Sobic003G365100 Sobic003G365100 Sobic005G090300--Sobic003G365100 Sobic003G270600 Sobic003G270600 Sobic004G236200--Sobic003G270600 Sobic004G236200--Sobic001G056800 Sobic004G236200--Sobic006G077300 Sobic004G228800 Sobic004G228800 Sobic004G236200--Sobic004G228800 Sobic004G236200--Sobic006G203300 Sobic003G427600 Sobic003G427600 Sobic004G236200--Sobic003G427600 Sobic004G236200--Sobic003G394200 Sobic007G205900 Sobic007G205900 Sobic004G236200--Sobic007G205900 Sobic004G236200--Sobic002G156000 Sobic003G209200--Sobic007G005500 Sobic003G209200--Sobic006G260500 Sobic003G209200--Sobic006G077300 Sobic003G209200--Sobic006G021700 Sobic003G209200--Sobic005G062200 Sobic004G241900 Sobic004G241900 Sobic003G209200--Sobic004G241900 Sobic004G261600 Sobic004G261600 Sobic003G209200--Sobic004G261600 Sobic005G110499 Sobic005G110499 Sobic003G209200--Sobic005G110499 Sobic009G077600 Sobic009G077600 Sobic003G209200--Sobic009G077600 Sobic008G124800 Sobic008G124800 Sobic006G021700--Sobic008G124800 Sobic006G021700--Sobic006G077300 Sobic006G021700--Sobic002G340900 Sobic005G059500 Sobic005G059500 Sobic006G021700--Sobic005G059500 Sobic006G021700--Sobic003G209200 Sobic003G346400 Sobic003G346400 Sobic006G021700--Sobic003G346400 Sobic010G000800 Sobic010G000800 Sobic006G021700--Sobic010G000800 Sobic006G021700--Sobic007G005500 Sobic006G021700--Sobic005G110499 Sobic002G340900--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic002G340900--Sobic001G437400 Sobic002G340900--Sobic006G021700 Sobic004G053500 Sobic004G053500 Sobic002G340900--Sobic004G053500 Sobic001G117800 Sobic001G117800 Sobic002G340900--Sobic001G117800 Sobic009G118900 Sobic009G118900 Sobic002G340900--Sobic009G118900 Sobic003G029600 Sobic003G029600 Sobic002G340900--Sobic003G029600 Sobic002G340900--Sobic004G223300 Sobic001G474400 Sobic001G474400 Sobic002G340900--Sobic001G474400 Sobic004G084500 Sobic004G084500 Sobic003G394200--Sobic004G084500 Sobic003G394200--Sobic006G203300 Sobic006G128100 Sobic006G128100 Sobic003G394200--Sobic006G128100 Sobic010G223400 Sobic010G223400 Sobic003G394200--Sobic010G223400 Sobic001G308400 Sobic001G308400 Sobic003G394200--Sobic001G308400 Sobic009G049400 Sobic009G049400 Sobic003G394200--Sobic009G049400 Sobic003G394200--Sobic003G270600 Sobic003G189600 Sobic003G189600 Sobic003G394200--Sobic003G189600 Sobic001G369000 Sobic001G369000 Sobic003G394200--Sobic001G369000 Sobic006G203300--Sobic003G394200 Sobic006G203300--Sobic003G346400 Sobic010G169900 Sobic010G169900 Sobic006G203300--Sobic010G169900 Sobic006G203300--Sobic004G236200 Sobic001G445500 Sobic001G445500 Sobic006G203300--Sobic001G445500 Sobic004G254800 Sobic004G254800 Sobic006G203300--Sobic004G254800 Sobic006G203300--Sobic001G308400 Sobic006G203300--Sobic001G474400 Sobic003G036500 Sobic003G036500 Sobic006G203300--Sobic003G036500 Sobic001G413900 Sobic001G413900 Sobic002G156000--Sobic001G413900 Sobic010G072800 Sobic010G072800 Sobic002G156000--Sobic010G072800 Sobic004G209800 Sobic004G209800 Sobic002G156000--Sobic004G209800 Sobic004G004200 Sobic004G004200 Sobic002G156000--Sobic004G004200 Sobic002G156000--Sobic004G261600 Sobic002G156000--Sobic004G236200 Sobic004G016000 Sobic004G016000 Sobic002G156000--Sobic004G016000 Sobic002G430000 Sobic002G430000 Sobic002G156000--Sobic002G430000 Sobic001G281100 Sobic001G281100 Sobic002G156000--Sobic001G281100
Octagon: transcription factors


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