Gene annotation
Transcriptome id Sobic.003G427600.1
Synonym VLN2, ATVLN2, Sb03g045970
Functional annotation villin protein, putative, expressed
UniProt C5XHX1
Pfam PF02209 PF00626
Panther DB PTHR11977 PTHR11977:SF46
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007010; cytoskeleton organization GO:0003779actin binding


Orthologs (automatic annotation)
TAIR AT2G41740 : villin 2
RAP-DB (Rice) LOC_Os03g24220.1 : villin protein, putative, expressed
MaizeGDB (Corn) Zm00025a002543 , Zm00025a025979 , Zm00025a052336 , Zm00025a039121
Brachypodium PNT77391 , PNT77392 , PNT77393 , PNT77394 , KQK11568 , KQK11569
Barley HORVU4Hr1G049770.3 , HORVU4Hr1G049770.2 , HORVU4Hr1G049770.1 , HORVU4Hr1G049770.7 , HORVU4Hr1G049770.6 , HORVU4Hr1G049770.5 , HORVU4Hr1G049770.4 , HORVU4Hr1G049770.9 , HORVU4Hr1G049770.8 , HORVU4Hr1G049770.12 , HORVU4Hr1G049770.11 , HORVU4Hr1G049770.10 , HORVU4Hr1G049770.16 , HORVU4Hr1G049770.14 , HORVU4Hr1G049770.19 , HORVU4Hr1G049770.18 , HORVU3Hr1G108110.8 , HORVU3Hr1G108110.9 , HORVU3Hr1G108110.1 , HORVU3Hr1G108110.2 , HORVU3Hr1G108110.3 , HORVU3Hr1G108110.4 , HORVU3Hr1G108110.5 , HORVU3Hr1G108110.6 , HORVU3Hr1G108110.7 , HORVU4Hr1G049770.13 , HORVU3Hr1G108110.29 , HORVU3Hr1G108110.28 , HORVU3Hr1G108110.23 , HORVU3Hr1G108110.22 , HORVU3Hr1G108110.21 , HORVU3Hr1G108110.20 , HORVU3Hr1G108110.27 , HORVU3Hr1G108110.25 , HORVU3Hr1G108110.24 , HORVU4Hr1G049770.28 , HORVU4Hr1G049770.22 , HORVU4Hr1G049770.23 , HORVU4Hr1G049770.20 , HORVU4Hr1G049770.21 , HORVU4Hr1G049770.26 , HORVU4Hr1G049770.27 , HORVU4Hr1G049770.24 , HORVU4Hr1G049770.25 , HORVU3Hr1G108110.30 , HORVU3Hr1G108110.31 , HORVU3Hr1G108110.32 , HORVU3Hr1G108110.33 , HORVU3Hr1G108110.34 , HORVU3Hr1G108110.35 , HORVU3Hr1G108110.36 , HORVU3Hr1G108110.37 , HORVU3Hr1G108110.12 , HORVU3Hr1G108110.13 , HORVU3Hr1G108110.10 , HORVU3Hr1G108110.11 , HORVU3Hr1G108110.16 , HORVU3Hr1G108110.17 , HORVU3Hr1G108110.14 , HORVU3Hr1G108110.15 , HORVU3Hr1G108110.18 , HORVU3Hr1G108110.19 , HORVU4Hr1G049770.17 , HORVU4Hr1G049770.15 , HORVU3Hr1G108110.26
Wheat TraesCS3B02G546200 , TraesCS3B02G546200 , TraesCS3B02G546200 , TraesCS3B02G546200 , TraesCS3B02G546200 , TraesCS3B02G546200 , TraesCS4D02G163700 , TraesCS4D02G163700 , TraesCS3D02G492600 , TraesCS3D02G492600 , TraesCS3D02G492600 , TraesCS4A02G156700 , TraesCS4A02G156700 , TraesCS4A02G156700 , TraesCS4B02G152700
Populus -


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cDNA sequences
Sobic.003G427600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G229600 tRNA-binding arm, putative, expressed -
2 Sobic.006G131000 expressed protein K11968: ariadne-1
3 Sobic.003G270600 adaptor complexes medium subunit family domain containing protein, expressed K12393: AP-1 complex subunit mu
4 Sobic.004G236200 SEC6, putative, expressed K06110: EXOC3, exocyst complex component 3
5 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
6 Sobic.001G281100 START domain containing protein, expressed -
7 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
8 Sobic.004G344901 - K10357: myosin V
9 Sobic.009G049400 "SRS3(Ortholog in rice:Kitagawa et al., 2010)"(PubMedID : 31659920)@ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
10 Sobic.004G261600 expressed protein -
11 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
12 Sobic.004G004300 expressed protein -
13 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
14 Sobic.008G123500 auxilin, putative, expressed -
15 Sobic.001G426600 SH3 domain containing protein, expressed -
16 Sobic.004G002100 G-protein alpha subunit, putative, expressed -
17 Sobic.004G002400 expressed protein -
18 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
19 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
20 Sobic.010G275500 EF hand family protein, putative, expressed -


Gene co-expression network
sample Sobic003G427600 Sobic003G427600 Sobic009G229600 Sobic009G229600 Sobic003G427600--Sobic009G229600 Sobic006G131000 Sobic006G131000 Sobic003G427600--Sobic006G131000 Sobic003G270600 Sobic003G270600 Sobic003G427600--Sobic003G270600 Sobic004G236200 Sobic004G236200 Sobic003G427600--Sobic004G236200 Sobic001G369000 Sobic001G369000 Sobic003G427600--Sobic001G369000 Sobic001G281100 Sobic001G281100 Sobic003G427600--Sobic001G281100 Sobic006G077300 Sobic006G077300 Sobic003G427600--Sobic006G077300 Sobic004G344901 Sobic004G344901 Sobic003G427600--Sobic004G344901 Sobic009G049400 Sobic009G049400 Sobic003G427600--Sobic009G049400 Sobic009G229600--Sobic009G049400 Sobic009G229600--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic009G229600--Sobic001G335900 Sobic009G229600--Sobic003G427600 Sobic009G229600--Sobic003G270600 Sobic006G202200 Sobic006G202200 Sobic009G229600--Sobic006G202200 Sobic001G518400 Sobic001G518400 Sobic009G229600--Sobic001G518400 Sobic004G039600 Sobic004G039600 Sobic009G229600--Sobic004G039600 Sobic007G120500 Sobic007G120500 Sobic009G229600--Sobic007G120500 Sobic007G218000 Sobic007G218000 Sobic006G131000--Sobic007G218000 Sobic007G132100 Sobic007G132100 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic006G131000--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic010G275500 Sobic010G275500 Sobic006G131000--Sobic010G275500 Sobic006G131000--Sobic001G369000 Sobic004G178200 Sobic004G178200 Sobic006G131000--Sobic004G178200 Sobic003G270600--Sobic004G236200 Sobic003G394200 Sobic003G394200 Sobic003G270600--Sobic003G394200 Sobic003G270600--Sobic009G229600 Sobic003G270600--Sobic003G427600 Sobic009G226400 Sobic009G226400 Sobic003G270600--Sobic009G226400 Sobic003G270600--Sobic004G039600 Sobic003G270600--Sobic001G369000 Sobic003G270600--Sobic009G049400 Sobic004G228800 Sobic004G228800 Sobic003G270600--Sobic004G228800 Sobic004G236200--Sobic003G270600 Sobic001G056800 Sobic001G056800 Sobic004G236200--Sobic001G056800 Sobic004G236200--Sobic006G077300 Sobic004G236200--Sobic004G228800 Sobic006G203300 Sobic006G203300 Sobic004G236200--Sobic006G203300 Sobic004G236200--Sobic003G427600 Sobic004G236200--Sobic003G394200 Sobic007G205900 Sobic007G205900 Sobic004G236200--Sobic007G205900 Sobic002G156000 Sobic002G156000 Sobic004G236200--Sobic002G156000 Sobic001G369000--Sobic004G039600 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic003G240700 Sobic003G240700 Sobic001G369000--Sobic003G240700 Sobic001G369000--Sobic006G163800 Sobic006G138000 Sobic006G138000 Sobic001G369000--Sobic006G138000 Sobic001G369000--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic001G369000--Sobic001G426600 Sobic001G369000--Sobic009G229600 Sobic001G534800 Sobic001G534800 Sobic001G281100--Sobic001G534800 Sobic004G004300 Sobic004G004300 Sobic001G281100--Sobic004G004300 Sobic001G065000 Sobic001G065000 Sobic001G281100--Sobic001G065000 Sobic005G026200 Sobic005G026200 Sobic001G281100--Sobic005G026200 Sobic008G099800 Sobic008G099800 Sobic001G281100--Sobic008G099800 Sobic003G229500 Sobic003G229500 Sobic001G281100--Sobic003G229500 Sobic006G012500 Sobic006G012500 Sobic001G281100--Sobic006G012500 Sobic004G072100 Sobic004G072100 Sobic001G281100--Sobic004G072100 Sobic001G281100--Sobic010G275500 Sobic006G260500 Sobic006G260500 Sobic006G077300--Sobic006G260500 Sobic006G021700 Sobic006G021700 Sobic006G077300--Sobic006G021700 Sobic003G209200 Sobic003G209200 Sobic006G077300--Sobic003G209200 Sobic006G077300--Sobic001G056800 Sobic002G401500 Sobic002G401500 Sobic006G077300--Sobic002G401500 Sobic003G114400 Sobic003G114400 Sobic006G077300--Sobic003G114400 Sobic007G005500 Sobic007G005500 Sobic006G077300--Sobic007G005500 Sobic005G062200 Sobic005G062200 Sobic006G077300--Sobic005G062200 Sobic002G042600 Sobic002G042600 Sobic006G077300--Sobic002G042600 Sobic003G331400 Sobic003G331400 Sobic004G344901--Sobic003G331400 Sobic003G337300 Sobic003G337300 Sobic004G344901--Sobic003G337300 Sobic001G163400 Sobic001G163400 Sobic004G344901--Sobic001G163400 Sobic004G344901--Sobic006G131000 Sobic004G344901--Sobic004G004300 Sobic001G415300 Sobic001G415300 Sobic004G344901--Sobic001G415300 Sobic008G003700 Sobic008G003700 Sobic004G344901--Sobic008G003700 Sobic004G344901--Sobic001G281100 Sobic002G137400 Sobic002G137400 Sobic004G344901--Sobic002G137400 Sobic009G049400--Sobic001G369000 Sobic009G049400--Sobic009G229600 Sobic009G049400--Sobic001G426600 Sobic009G049400--Sobic003G394200 Sobic009G049400--Sobic001G335900 Sobic009G049400--Sobic006G163800 Sobic003G189600 Sobic003G189600 Sobic009G049400--Sobic003G189600 Sobic009G049400--Sobic004G039600 Sobic009G049400--Sobic003G240700
Octagon: transcription factors


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