Gene annotation
Transcriptome id Sobic.003G270600.1
Synonym Sb03g032290, HAP13
Functional annotation adaptor complexes medium subunit family domain containing protein, expressed
UniProt C5XHL2
Pfam PF01217 PF00928
Panther DB PTHR10529
NCBI CDD -
KEGG Orthology K12393; AP-1 complex subunit mu
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G60780 : Clathrin adaptor complexes medium subunit family protein
RAP-DB (Rice) LOC_Os01g50770.1 : adaptor complexes medium subunit family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022450 , Zm00025a027877 , Zm00025a038919
Brachypodium KQK05104 , KQK09375
Barley HORVU1Hr1G079050.1 , HORVU1Hr1G079050.2 , HORVU1Hr1G079050.3 , HORVU1Hr1G079050.4 , HORVU1Hr1G079050.5 , HORVU1Hr1G079050.6 , HORVU1Hr1G079050.7 , HORVU1Hr1G079050.8 , HORVU3Hr1G066020.3 , HORVU3Hr1G066020.2 , HORVU3Hr1G066020.1 , HORVU3Hr1G066020.4
Wheat TraesCS3A02G254200 , TraesCS3A02G254200 , TraesCS3A02G254200 , TraesCS3B02G286200 , TraesCS3B02G286200 , TraesCS3B02G286200 , TraesCS1A02G365600 , TraesCS1B02G383200 , TraesCS1B02G383200 , TraesCS3D02G255100 , TraesCS1D02G371000 , TraesCS1D02G371000 , TraesCS1D02G371000 , TraesCS3D02G255100
Populus PNT25485


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cDNA sequences
Sobic.003G270600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G236200 SEC6, putative, expressed K06110: EXOC3, exocyst complex component 3
2 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
3 Sobic.009G229600 tRNA-binding arm, putative, expressed -
4 Sobic.003G427600 villin protein, putative, expressed -
5 Sobic.009G226400 dynamin family protein, putative, expressed -
6 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
7 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
8 Sobic.009G049400 "SRS3(Ortholog in rice:Kitagawa et al., 2010)"(PubMedID : 31659920)@ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
9 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
10 Sobic.001G193100 expressed protein -
11 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
12 Sobic.007G205900 uvrB/uvrC motif family protein, expressed -
13 Sobic.001G023100 ACBP4, putative, expressed -
14 Sobic.003G195500 SEY1, putative, expressed -
15 Sobic.004G254800 heat shock protein DnaJ, putative, expressed K19371: DnaJ homolog subfamily C member 25
16 Sobic.003G346400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
17 Sobic.003G187200 phox domain-containing protein, putative, expressed -
18 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
19 Sobic.001G127000 alkaline phytoceramidase, putative, expressed K04711: ACER3, dihydroceramidase
20 Sobic.001G122000 oxysterol-binding protein, putative, expressed -


Gene co-expression network
sample Sobic003G270600 Sobic003G270600 Sobic004G236200 Sobic004G236200 Sobic003G270600--Sobic004G236200 Sobic003G394200 Sobic003G394200 Sobic003G270600--Sobic003G394200 Sobic009G229600 Sobic009G229600 Sobic003G270600--Sobic009G229600 Sobic003G427600 Sobic003G427600 Sobic003G270600--Sobic003G427600 Sobic009G226400 Sobic009G226400 Sobic003G270600--Sobic009G226400 Sobic004G039600 Sobic004G039600 Sobic003G270600--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic003G270600--Sobic001G369000 Sobic009G049400 Sobic009G049400 Sobic003G270600--Sobic009G049400 Sobic004G228800 Sobic004G228800 Sobic003G270600--Sobic004G228800 Sobic004G236200--Sobic003G270600 Sobic001G056800 Sobic001G056800 Sobic004G236200--Sobic001G056800 Sobic006G077300 Sobic006G077300 Sobic004G236200--Sobic006G077300 Sobic004G236200--Sobic004G228800 Sobic006G203300 Sobic006G203300 Sobic004G236200--Sobic006G203300 Sobic004G236200--Sobic003G427600 Sobic004G236200--Sobic003G394200 Sobic007G205900 Sobic007G205900 Sobic004G236200--Sobic007G205900 Sobic002G156000 Sobic002G156000 Sobic004G236200--Sobic002G156000 Sobic004G084500 Sobic004G084500 Sobic003G394200--Sobic004G084500 Sobic003G394200--Sobic006G203300 Sobic006G128100 Sobic006G128100 Sobic003G394200--Sobic006G128100 Sobic010G223400 Sobic010G223400 Sobic003G394200--Sobic010G223400 Sobic001G308400 Sobic001G308400 Sobic003G394200--Sobic001G308400 Sobic003G394200--Sobic009G049400 Sobic003G394200--Sobic003G270600 Sobic003G189600 Sobic003G189600 Sobic003G394200--Sobic003G189600 Sobic003G394200--Sobic001G369000 Sobic009G229600--Sobic009G049400 Sobic009G229600--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic009G229600--Sobic001G335900 Sobic009G229600--Sobic003G427600 Sobic009G229600--Sobic003G270600 Sobic006G202200 Sobic006G202200 Sobic009G229600--Sobic006G202200 Sobic001G518400 Sobic001G518400 Sobic009G229600--Sobic001G518400 Sobic009G229600--Sobic004G039600 Sobic007G120500 Sobic007G120500 Sobic009G229600--Sobic007G120500 Sobic003G427600--Sobic009G229600 Sobic006G131000 Sobic006G131000 Sobic003G427600--Sobic006G131000 Sobic003G427600--Sobic003G270600 Sobic003G427600--Sobic004G236200 Sobic003G427600--Sobic001G369000 Sobic001G281100 Sobic001G281100 Sobic003G427600--Sobic001G281100 Sobic003G427600--Sobic006G077300 Sobic004G344901 Sobic004G344901 Sobic003G427600--Sobic004G344901 Sobic003G427600--Sobic009G049400 Sobic001G023100 Sobic001G023100 Sobic009G226400--Sobic001G023100 Sobic009G226400--Sobic003G270600 SobicK004100 SobicK004100 Sobic009G226400--SobicK004100 Sobic009G226400--Sobic001G369000 Sobic002G029300 Sobic002G029300 Sobic009G226400--Sobic002G029300 Sobic009G226400--Sobic001G335900 Sobic006G056200 Sobic006G056200 Sobic009G226400--Sobic006G056200 Sobic009G226400--Sobic004G039600 Sobic001G420800 Sobic001G420800 Sobic009G226400--Sobic001G420800 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic004G039600--Sobic007G120500 Sobic001G369000--Sobic004G039600 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic003G240700 Sobic003G240700 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic006G138000 Sobic006G138000 Sobic001G369000--Sobic006G138000 Sobic001G369000--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic001G369000--Sobic001G426600 Sobic001G369000--Sobic009G229600 Sobic009G049400--Sobic001G369000 Sobic009G049400--Sobic009G229600 Sobic009G049400--Sobic001G426600 Sobic009G049400--Sobic003G394200 Sobic009G049400--Sobic001G335900 Sobic009G049400--Sobic006G163800 Sobic009G049400--Sobic003G189600 Sobic009G049400--Sobic004G039600 Sobic009G049400--Sobic003G240700 Sobic004G261600 Sobic004G261600 Sobic004G228800--Sobic004G261600 Sobic010G261600 Sobic010G261600 Sobic004G228800--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic004G228800--Sobic004G323700 Sobic010G278200 Sobic010G278200 Sobic004G228800--Sobic010G278200 Sobic004G228800--Sobic004G236200 Sobic004G228800--Sobic006G131000 Sobic005G177700 Sobic005G177700 Sobic004G228800--Sobic005G177700 Sobic007G056600 Sobic007G056600 Sobic004G228800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic004G228800--Sobic003G126300
Octagon: transcription factors


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