Gene annotation
Transcriptome id Sobic.007G205900.1
Synonym Sb07g027330
Functional annotation uvrB/uvrC motif family protein, expressed
UniProt C5YIM9
Pfam PF02151
Panther DB PTHR38394 PTHR38394:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G25070 : -
RAP-DB (Rice) LOC_Os08g40450.1 : uvrB/uvrC motif family protein, expressed
MaizeGDB (Corn) Zm00025a005132 , Zm00025a030331
Brachypodium KQJ98970
Barley HORVU7Hr1G051520.15 , HORVU7Hr1G051520.12 , HORVU7Hr1G051520.22 , HORVU7Hr1G051520.21 , HORVU7Hr1G051520.20
Wheat TraesCS7B02G141000 , TraesCS7A02G250200 , TraesCS7D02G248900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
2 Sobic.004G236200 SEC6, putative, expressed K06110: EXOC3, exocyst complex component 3
3 Sobic.003G270600 adaptor complexes medium subunit family domain containing protein, expressed K12393: AP-1 complex subunit mu
4 Sobic.003G195500 SEY1, putative, expressed -
5 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
6 Sobic.004G002400 expressed protein -
7 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
8 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
9 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
10 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
11 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
12 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
13 Sobic.003G126300 OsRhmbd2 - Putative Rhomboid homologue, expressed -
14 Sobic.010G020300 spastin, putative, expressed K13254: spastin
15 Sobic.001G281100 START domain containing protein, expressed -
16 Sobic.006G237900 UBA/TS-N domain containing protein, expressed -
17 Sobic.002G361300 eukaryotic aspartyl protease domain containing protein, expressed -
18 Sobic.004G261600 expressed protein -
19 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
20 Sobic.009G229600 tRNA-binding arm, putative, expressed -


Gene co-expression network
sample Sobic007G205900 Sobic007G205900 Sobic010G261600 Sobic010G261600 Sobic007G205900--Sobic010G261600 Sobic004G236200 Sobic004G236200 Sobic007G205900--Sobic004G236200 Sobic003G270600 Sobic003G270600 Sobic007G205900--Sobic003G270600 Sobic003G195500 Sobic003G195500 Sobic007G205900--Sobic003G195500 Sobic004G228800 Sobic004G228800 Sobic007G205900--Sobic004G228800 Sobic004G002400 Sobic004G002400 Sobic007G205900--Sobic004G002400 Sobic005G059600 Sobic005G059600 Sobic007G205900--Sobic005G059600 Sobic006G271200 Sobic006G271200 Sobic007G205900--Sobic006G271200 Sobic006G034000 Sobic006G034000 Sobic007G205900--Sobic006G034000 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic002G303600 Sobic002G303600 Sobic010G261600--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic010G261600--Sobic002G008800 Sobic010G261600--Sobic004G228800 Sobic004G323700 Sobic004G323700 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic004G275700 Sobic004G275700 Sobic010G261600--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic010G261600--Sobic010G020400 Sobic004G236200--Sobic003G270600 Sobic001G056800 Sobic001G056800 Sobic004G236200--Sobic001G056800 Sobic006G077300 Sobic006G077300 Sobic004G236200--Sobic006G077300 Sobic004G236200--Sobic004G228800 Sobic006G203300 Sobic006G203300 Sobic004G236200--Sobic006G203300 Sobic003G427600 Sobic003G427600 Sobic004G236200--Sobic003G427600 Sobic003G394200 Sobic003G394200 Sobic004G236200--Sobic003G394200 Sobic004G236200--Sobic007G205900 Sobic002G156000 Sobic002G156000 Sobic004G236200--Sobic002G156000 Sobic003G270600--Sobic004G236200 Sobic003G270600--Sobic003G394200 Sobic009G229600 Sobic009G229600 Sobic003G270600--Sobic009G229600 Sobic003G270600--Sobic003G427600 Sobic009G226400 Sobic009G226400 Sobic003G270600--Sobic009G226400 Sobic004G039600 Sobic004G039600 Sobic003G270600--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic003G270600--Sobic001G369000 Sobic009G049400 Sobic009G049400 Sobic003G270600--Sobic009G049400 Sobic003G270600--Sobic004G228800 Sobic001G065000 Sobic001G065000 Sobic003G195500--Sobic001G065000 Sobic006G012500 Sobic006G012500 Sobic003G195500--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic003G195500--Sobic001G534800 Sobic003G195500--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic003G195500--Sobic004G178200 Sobic001G281100 Sobic001G281100 Sobic003G195500--Sobic001G281100 Sobic004G146500 Sobic004G146500 Sobic003G195500--Sobic004G146500 Sobic007G119200 Sobic007G119200 Sobic003G195500--Sobic007G119200 Sobic006G131000 Sobic006G131000 Sobic003G195500--Sobic006G131000 Sobic004G261600 Sobic004G261600 Sobic004G228800--Sobic004G261600 Sobic004G228800--Sobic010G261600 Sobic004G228800--Sobic004G323700 Sobic010G278200 Sobic010G278200 Sobic004G228800--Sobic010G278200 Sobic004G228800--Sobic004G236200 Sobic004G228800--Sobic006G131000 Sobic005G177700 Sobic005G177700 Sobic004G228800--Sobic005G177700 Sobic007G056600 Sobic007G056600 Sobic004G228800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic004G228800--Sobic003G126300 Sobic004G002400--Sobic001G281100 Sobic004G002400--Sobic004G039600 Sobic003G187500 Sobic003G187500 Sobic004G002400--Sobic003G187500 Sobic007G132100 Sobic007G132100 Sobic004G002400--Sobic007G132100 Sobic006G126100 Sobic006G126100 Sobic004G002400--Sobic006G126100 Sobic001G124200 Sobic001G124200 Sobic004G002400--Sobic001G124200 Sobic001G466700 Sobic001G466700 Sobic004G002400--Sobic001G466700 Sobic009G249200 Sobic009G249200 Sobic004G002400--Sobic009G249200 Sobic004G002400--Sobic001G534800 Sobic004G351300 Sobic004G351300 Sobic005G059600--Sobic004G351300 Sobic005G059600--Sobic006G271200 Sobic002G270500 Sobic002G270500 Sobic005G059600--Sobic002G270500 Sobic006G237900 Sobic006G237900 Sobic005G059600--Sobic006G237900 Sobic004G177300 Sobic004G177300 Sobic005G059600--Sobic004G177300 Sobic005G059600--Sobic010G261600 Sobic005G059600--Sobic004G228800 Sobic001G273700 Sobic001G273700 Sobic005G059600--Sobic001G273700 Sobic004G016000 Sobic004G016000 Sobic005G059600--Sobic004G016000 Sobic001G003000 Sobic001G003000 Sobic006G271200--Sobic001G003000 Sobic006G271200--Sobic006G237900 Sobic009G126900 Sobic009G126900 Sobic006G271200--Sobic009G126900 Sobic010G130200 Sobic010G130200 Sobic006G271200--Sobic010G130200 Sobic001G089800 Sobic001G089800 Sobic006G271200--Sobic001G089800 Sobic010G043400 Sobic010G043400 Sobic006G271200--Sobic010G043400 Sobic006G271200--Sobic004G351300 Sobic001G436900 Sobic001G436900 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800 Sobic003G312200 Sobic003G312200 Sobic006G034000--Sobic003G312200 Sobic001G323000 Sobic001G323000 Sobic006G034000--Sobic001G323000 Sobic003G436300 Sobic003G436300 Sobic006G034000--Sobic003G436300 Sobic006G148200 Sobic006G148200 Sobic006G034000--Sobic006G148200 Sobic001G180900 Sobic001G180900 Sobic006G034000--Sobic001G180900 Sobic010G130000 Sobic010G130000 Sobic006G034000--Sobic010G130000 Sobic001G091300 Sobic001G091300 Sobic006G034000--Sobic001G091300 Sobic008G110600 Sobic008G110600 Sobic006G034000--Sobic008G110600 Sobic006G034000--Sobic009G228700
Octagon: transcription factors


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