Gene annotation
Transcriptome id Sobic.003G126300.2,Sobic.003G126300.1
Synonym Sb03g010680
Functional annotation OsRhmbd2 - Putative Rhomboid homologue, expressed
UniProt A0A1B6Q2U7 , C5XGL6
Pfam PF00627
Panther DB PTHR12917 PTHR12917:SF20 PTHR12917 PTHR12917:SF11
NCBI CDD KOG4463; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G56740 : Ubiquitin-associated (UBA) protein
RAP-DB (Rice) LOC_Os01g16330.1 : OsRhmbd2 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a024099
Brachypodium KQK03831
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
2 Sobic.009G079300 receptor protein kinase-like, putative, expressed -
3 Sobic.004G004200 expressed protein -
4 Sobic.008G110600 expressed protein -
5 Sobic.004G261600 expressed protein -
6 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
7 Sobic.003G272400 DUF292 domain containing protein, expressed -
8 Sobic.007G056600 expressed protein -
9 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
10 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
11 Sobic.007G203300 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
12 Sobic.003G036800 WD domain, G-beta repeat domain containing protein, expressed K10260: FBXW7, F-box and WD-40 domain protein 7
13 Sobic.001G180900 secretory carrier-associated membrane protein 4, putative, expressed -
14 Sobic.003G281900 regulator of chromosome condensation, putative, expressed -
15 Sobic.002G031100 resistance protein LR10, putative, expressed -
16 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.007G205900 uvrB/uvrC motif family protein, expressed -
18 Sobic.007G200500 "Candidate orthologue to the wheat Pm40 gene, 5 Calcium-transporting ATPase plasma membrane-type"(PubMedID : 27755575)@"Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
19 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
20 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4


Gene co-expression network
sample Sobic003G126300 Sobic003G126300 Sobic004G228800 Sobic004G228800 Sobic003G126300--Sobic004G228800 Sobic009G079300 Sobic009G079300 Sobic003G126300--Sobic009G079300 Sobic004G004200 Sobic004G004200 Sobic003G126300--Sobic004G004200 Sobic008G110600 Sobic008G110600 Sobic003G126300--Sobic008G110600 Sobic004G261600 Sobic004G261600 Sobic003G126300--Sobic004G261600 Sobic006G034000 Sobic006G034000 Sobic003G126300--Sobic006G034000 Sobic003G272400 Sobic003G272400 Sobic003G126300--Sobic003G272400 Sobic007G056600 Sobic007G056600 Sobic003G126300--Sobic007G056600 Sobic006G033200 Sobic006G033200 Sobic003G126300--Sobic006G033200 Sobic004G228800--Sobic004G261600 Sobic010G261600 Sobic010G261600 Sobic004G228800--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic004G228800--Sobic004G323700 Sobic010G278200 Sobic010G278200 Sobic004G228800--Sobic010G278200 Sobic004G236200 Sobic004G236200 Sobic004G228800--Sobic004G236200 Sobic006G131000 Sobic006G131000 Sobic004G228800--Sobic006G131000 Sobic005G177700 Sobic005G177700 Sobic004G228800--Sobic005G177700 Sobic004G228800--Sobic007G056600 Sobic004G228800--Sobic003G126300 Sobic009G000200 Sobic009G000200 Sobic009G079300--Sobic009G000200 Sobic004G236550 Sobic004G236550 Sobic009G079300--Sobic004G236550 Sobic009G079300--Sobic003G126300 Sobic003G316300 Sobic003G316300 Sobic009G079300--Sobic003G316300 Sobic007G025800 Sobic007G025800 Sobic009G079300--Sobic007G025800 Sobic001G180900 Sobic001G180900 Sobic009G079300--Sobic001G180900 Sobic009G079300--Sobic003G272400 Sobic009G136100 Sobic009G136100 Sobic009G079300--Sobic009G136100 Sobic003G367300 Sobic003G367300 Sobic009G079300--Sobic003G367300 Sobic004G004300 Sobic004G004300 Sobic004G004200--Sobic004G004300 Sobic001G281100 Sobic001G281100 Sobic004G004200--Sobic001G281100 Sobic002G430000 Sobic002G430000 Sobic004G004200--Sobic002G430000 Sobic004G269200 Sobic004G269200 Sobic004G004200--Sobic004G269200 Sobic001G101100 Sobic001G101100 Sobic004G004200--Sobic001G101100 Sobic001G251200 Sobic001G251200 Sobic004G004200--Sobic001G251200 Sobic004G004200--Sobic004G261600 Sobic002G270500 Sobic002G270500 Sobic004G004200--Sobic002G270500 Sobic004G004200--Sobic003G126300 Sobic008G110600--Sobic006G034000 Sobic008G110600--Sobic003G126300 Sobic010G130000 Sobic010G130000 Sobic008G110600--Sobic010G130000 Sobic004G178200 Sobic004G178200 Sobic008G110600--Sobic004G178200 Sobic003G036800 Sobic003G036800 Sobic008G110600--Sobic003G036800 Sobic001G091300 Sobic001G091300 Sobic008G110600--Sobic001G091300 Sobic002G427050 Sobic002G427050 Sobic008G110600--Sobic002G427050 Sobic008G093000 Sobic008G093000 Sobic008G110600--Sobic008G093000 Sobic002G427000 Sobic002G427000 Sobic008G110600--Sobic002G427000 Sobic004G261600--Sobic004G228800 Sobic006G126100 Sobic006G126100 Sobic004G261600--Sobic006G126100 Sobic003G209200 Sobic003G209200 Sobic004G261600--Sobic003G209200 Sobic003G104000 Sobic003G104000 Sobic004G261600--Sobic003G104000 Sobic007G005500 Sobic007G005500 Sobic004G261600--Sobic007G005500 Sobic004G261600--Sobic001G251200 Sobic001G415300 Sobic001G415300 Sobic004G261600--Sobic001G415300 Sobic004G261600--Sobic004G004300 Sobic008G099800 Sobic008G099800 Sobic004G261600--Sobic008G099800 Sobic003G312200 Sobic003G312200 Sobic006G034000--Sobic003G312200 Sobic001G323000 Sobic001G323000 Sobic006G034000--Sobic001G323000 Sobic003G436300 Sobic003G436300 Sobic006G034000--Sobic003G436300 Sobic006G148200 Sobic006G148200 Sobic006G034000--Sobic006G148200 Sobic006G034000--Sobic001G180900 Sobic006G034000--Sobic010G130000 Sobic006G034000--Sobic001G091300 Sobic006G034000--Sobic008G110600 Sobic009G228700 Sobic009G228700 Sobic006G034000--Sobic009G228700 Sobic004G353600 Sobic004G353600 Sobic003G272400--Sobic004G353600 Sobic003G281900 Sobic003G281900 Sobic003G272400--Sobic003G281900 Sobic003G252400 Sobic003G252400 Sobic003G272400--Sobic003G252400 Sobic002G306000 Sobic002G306000 Sobic003G272400--Sobic002G306000 Sobic010G260300 Sobic010G260300 Sobic003G272400--Sobic010G260300 Sobic003G272400--Sobic003G126300 Sobic006G207900 Sobic006G207900 Sobic003G272400--Sobic006G207900 Sobic001G110900 Sobic001G110900 Sobic003G272400--Sobic001G110900 Sobic004G309600 Sobic004G309600 Sobic003G272400--Sobic004G309600 Sobic007G056600--Sobic004G261600 Sobic007G056600--Sobic004G228800 Sobic007G203300 Sobic007G203300 Sobic007G056600--Sobic007G203300 Sobic010G232600 Sobic010G232600 Sobic007G056600--Sobic010G232600 Sobic006G077300 Sobic006G077300 Sobic007G056600--Sobic006G077300 Sobic004G124500 Sobic004G124500 Sobic007G056600--Sobic004G124500 Sobic007G056600--Sobic003G126300 Sobic003G119700 Sobic003G119700 Sobic007G056600--Sobic003G119700 Sobic007G056600--Sobic001G251200 Sobic006G033200--Sobic010G130000 Sobic008G124900 Sobic008G124900 Sobic006G033200--Sobic008G124900 Sobic006G033200--Sobic010G278200 Sobic009G138100 Sobic009G138100 Sobic006G033200--Sobic009G138100 Sobic007G093800 Sobic007G093800 Sobic006G033200--Sobic007G093800 Sobic004G202500 Sobic004G202500 Sobic006G033200--Sobic004G202500 Sobic007G179800 Sobic007G179800 Sobic006G033200--Sobic007G179800 Sobic003G302900 Sobic003G302900 Sobic006G033200--Sobic003G302900 Sobic006G033200--Sobic003G312200
Octagon: transcription factors


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