Gene annotation
Transcriptome id Sobic.003G281900.2,Sobic.003G281900.3
Synonym Sb03g033330
Functional annotation regulator of chromosome condensation, putative, expressed
UniProt A0A1W0VZB0 , A0A1W0VZB5
Pfam PF00415
Panther DB PTHR22870 PTHR22870:SF155
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11580 : Regulator of chromosome condensation (RCC1) family protein
RAP-DB (Rice) LOC_Os01g52630.1 : regulator of chromosome condensation, putative, expressed
MaizeGDB (Corn) Zm00025a027729
Brachypodium PNT72754 , PNT72753
Barley HORVU3Hr1G068780.6 , HORVU3Hr1G068780.18 , HORVU3Hr1G068780.19 , HORVU3Hr1G068780.17 , HORVU3Hr1G068780.15 , HORVU3Hr1G068780.11 , HORVU3Hr1G068780.24 , HORVU3Hr1G068780.23 , HORVU3Hr1G068780.22 , HORVU3Hr1G068780.21 , HORVU3Hr1G068780.20
Wheat TraesCS3D02G284600 , TraesCS3D02G284600 , TraesCS3B02G318700 , TraesCS3B02G318700 , TraesCS3B02G318700 , TraesCS3B02G318700 , TraesCS3A02G284800 , TraesCS3A02G284800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G272400 DUF292 domain containing protein, expressed -
2 Sobic.009G097300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
3 Sobic.002G306000 calmodulin-binding transcription activator 5, putative, expressed -
4 Sobic.003G126300 OsRhmbd2 - Putative Rhomboid homologue, expressed -
5 Sobic.004G353600 sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed K15378: solute carrier family 45, member 1/2/4
6 Sobic.003G397500 expressed protein -
7 Sobic.009G213000 protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
8 Sobic.009G079300 receptor protein kinase-like, putative, expressed -
9 Sobic.007G047700 no apical meristem protein, putative, expressed -
10 Sobic.003G137900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.003G252400 drought induced 19 protein, putative, expressed -
12 Sobic.002G031100 resistance protein LR10, putative, expressed -
13 Sobic.006G086100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
14 Sobic.007G196900 expressed protein -
15 Sobic.006G115300 amino acid transporter, putative, expressed -
16 Sobic.003G269800 phosphatidylinositol transfer, putative, expressed -
17 Sobic.009G118600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
18 Sobic.006G258800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
19 Sobic.004G236550 - -
20 Sobic.003G407200 calmodulin-binding transcription activator, putative, expressed -


Gene co-expression network
sample Sobic003G281900 Sobic003G281900 Sobic003G272400 Sobic003G272400 Sobic003G281900--Sobic003G272400 Sobic009G097300 Sobic009G097300 Sobic003G281900--Sobic009G097300 Sobic002G306000 Sobic002G306000 Sobic003G281900--Sobic002G306000 Sobic003G126300 Sobic003G126300 Sobic003G281900--Sobic003G126300 Sobic004G353600 Sobic004G353600 Sobic003G281900--Sobic004G353600 Sobic003G397500 Sobic003G397500 Sobic003G281900--Sobic003G397500 Sobic009G213000 Sobic009G213000 Sobic003G281900--Sobic009G213000 Sobic009G079300 Sobic009G079300 Sobic003G281900--Sobic009G079300 Sobic007G047700 Sobic007G047700 Sobic003G281900--Sobic007G047700 Sobic003G272400--Sobic004G353600 Sobic003G272400--Sobic003G281900 Sobic003G252400 Sobic003G252400 Sobic003G272400--Sobic003G252400 Sobic003G272400--Sobic002G306000 Sobic010G260300 Sobic010G260300 Sobic003G272400--Sobic010G260300 Sobic003G272400--Sobic003G126300 Sobic006G207900 Sobic006G207900 Sobic003G272400--Sobic006G207900 Sobic001G110900 Sobic001G110900 Sobic003G272400--Sobic001G110900 Sobic004G309600 Sobic004G309600 Sobic003G272400--Sobic004G309600 Sobic003G137900 Sobic003G137900 Sobic009G097300--Sobic003G137900 Sobic005G215766 Sobic005G215766 Sobic009G097300--Sobic005G215766 Sobic003G397400 Sobic003G397400 Sobic009G097300--Sobic003G397400 Sobic006G272700 Sobic006G272700 Sobic009G097300--Sobic006G272700 Sobic009G097300--Sobic003G281900 Sobic003G064300 Sobic003G064300 Sobic009G097300--Sobic003G064300 Sobic009G076700 Sobic009G076700 Sobic009G097300--Sobic009G076700 Sobic007G073750 Sobic007G073750 Sobic009G097300--Sobic007G073750 Sobic007G143200 Sobic007G143200 Sobic009G097300--Sobic007G143200 Sobic002G306000--Sobic004G353600 Sobic002G306000--Sobic003G272400 Sobic002G306000--Sobic003G281900 Sobic003G407200 Sobic003G407200 Sobic002G306000--Sobic003G407200 Sobic007G196900 Sobic007G196900 Sobic002G306000--Sobic007G196900 Sobic010G140500 Sobic010G140500 Sobic002G306000--Sobic010G140500 Sobic001G015800 Sobic001G015800 Sobic002G306000--Sobic001G015800 Sobic001G096000 Sobic001G096000 Sobic002G306000--Sobic001G096000 Sobic009G219000 Sobic009G219000 Sobic002G306000--Sobic009G219000 Sobic004G228800 Sobic004G228800 Sobic003G126300--Sobic004G228800 Sobic003G126300--Sobic009G079300 Sobic004G004200 Sobic004G004200 Sobic003G126300--Sobic004G004200 Sobic008G110600 Sobic008G110600 Sobic003G126300--Sobic008G110600 Sobic004G261600 Sobic004G261600 Sobic003G126300--Sobic004G261600 Sobic006G034000 Sobic006G034000 Sobic003G126300--Sobic006G034000 Sobic003G126300--Sobic003G272400 Sobic007G056600 Sobic007G056600 Sobic003G126300--Sobic007G056600 Sobic006G033200 Sobic006G033200 Sobic003G126300--Sobic006G033200 Sobic004G353600--Sobic003G272400 Sobic004G353600--Sobic002G306000 Sobic006G078300 Sobic006G078300 Sobic004G353600--Sobic006G078300 Sobic003G087100 Sobic003G087100 Sobic004G353600--Sobic003G087100 Sobic003G378000 Sobic003G378000 Sobic004G353600--Sobic003G378000 Sobic001G157400 Sobic001G157400 Sobic004G353600--Sobic001G157400 Sobic003G332000 Sobic003G332000 Sobic004G353600--Sobic003G332000 Sobic001G075800 Sobic001G075800 Sobic004G353600--Sobic001G075800 Sobic006G203000 Sobic006G203000 Sobic004G353600--Sobic006G203000 Sobic003G397500--Sobic003G252400 Sobic008G075600 Sobic008G075600 Sobic003G397500--Sobic008G075600 Sobic004G211301 Sobic004G211301 Sobic003G397500--Sobic004G211301 Sobic002G331450 Sobic002G331450 Sobic003G397500--Sobic002G331450 Sobic010G026500 Sobic010G026500 Sobic003G397500--Sobic010G026500 Sobic002G110200 Sobic002G110200 Sobic003G397500--Sobic002G110200 Sobic002G229600 Sobic002G229600 Sobic003G397500--Sobic002G229600 Sobic008G031300 Sobic008G031300 Sobic003G397500--Sobic008G031300 Sobic010G085400 Sobic010G085400 Sobic003G397500--Sobic010G085400 Sobic009G213000--Sobic003G281900 Sobic009G213000--Sobic007G047700 Sobic001G350700 Sobic001G350700 Sobic009G213000--Sobic001G350700 Sobic006G086100 Sobic006G086100 Sobic009G213000--Sobic006G086100 Sobic001G538700 Sobic001G538700 Sobic009G213000--Sobic001G538700 Sobic006G271200 Sobic006G271200 Sobic009G213000--Sobic006G271200 Sobic002G270500 Sobic002G270500 Sobic009G213000--Sobic002G270500 Sobic001G298500 Sobic001G298500 Sobic009G213000--Sobic001G298500 Sobic001G173900 Sobic001G173900 Sobic009G213000--Sobic001G173900 Sobic009G000200 Sobic009G000200 Sobic009G079300--Sobic009G000200 Sobic004G236550 Sobic004G236550 Sobic009G079300--Sobic004G236550 Sobic009G079300--Sobic003G126300 Sobic003G316300 Sobic003G316300 Sobic009G079300--Sobic003G316300 Sobic007G025800 Sobic007G025800 Sobic009G079300--Sobic007G025800 Sobic001G180900 Sobic001G180900 Sobic009G079300--Sobic001G180900 Sobic009G079300--Sobic003G272400 Sobic009G136100 Sobic009G136100 Sobic009G079300--Sobic009G136100 Sobic003G367300 Sobic003G367300 Sobic009G079300--Sobic003G367300 Sobic003G036800 Sobic003G036800 Sobic007G047700--Sobic003G036800 Sobic008G123500 Sobic008G123500 Sobic007G047700--Sobic008G123500 Sobic004G002100 Sobic004G002100 Sobic007G047700--Sobic004G002100 Sobic009G184700 Sobic009G184700 Sobic007G047700--Sobic009G184700 Sobic001G095500 Sobic001G095500 Sobic007G047700--Sobic001G095500 Sobic001G440600 Sobic001G440600 Sobic007G047700--Sobic001G440600 Sobic007G047700--Sobic003G281900 Sobic007G047700--Sobic001G173900 Sobic003G195500 Sobic003G195500 Sobic007G047700--Sobic003G195500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.