Gene annotation
| Transcriptome id | Sobic.009G097300.4,Sobic.009G097300.3 |
|---|---|
| Synonym | SNRK3.22,CBL-interacting protein kinases, SIP4, Sb09g014000, CIPK11, PKS5, SbCIPK11 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543) Interacting factor of CBLs (PubMedID : 19860013) CAMK_KIN1/SNF1/Nim1_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| UniProt | C4P7U3 |
| Pfam | PF03822 PF14531 PF14531 PF03822 |
| Panther DB | PTHR24347 PTHR24347:SF227 PTHR24347:SF227 PTHR24347 |
| NCBI CDD | KOG0583; Serine/threonine protein kinase |
| KEGG Orthology | - |
| Gene Ontology | GO:0007165; signal transduction |
Orthologs (automatic annotation)
| TAIR | AT2G30360 : SOS3-interacting protein 4 |
|---|---|
| RAP-DB (Rice) | LOC_Os05g26940.1 : CAMK_KIN1/SNF1/Nim1_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | HORVU2Hr1G117610.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G137900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein | - |
| 2 | Sobic.005G215766 | - | - |
| 3 | Sobic.003G397400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein | - |
| 4 | Sobic.006G272700 | Up-reguralion under drought(PubMedID : 24916767)@expressed protein | - |
| 5 | Sobic.003G281900 | regulator of chromosome condensation, putative, expressed | - |
| 6 | Sobic.003G064300 | - | - |
| 7 | Sobic.009G076700 | expressed protein | - |
| 8 | Sobic.007G073750 | - | - |
| 9 | Sobic.007G143200 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- | - |
| 10 | Sobic.010G201200 | expressed protein | - |
| 11 | Sobic.010G253500 | cycloartenol synthase, putative, expressed | K19011: achilleol B synthase |
| 12 | Sobic.007G143100 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- | - |
| 13 | Sobic.005G016900 | CRP11 - Cysteine-rich family protein precursor, expressed | - |
| 14 | Sobic.009G118600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@eukaryotic peptide chain release factor subunit 1-1, putative, expressed | K03265: ETF1, peptide chain release factor subunit 1 |
| 15 | Sobic.001G235500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 16 | Sobic.008G058900 | amino acid transporter, putative, expressed | - |
| 17 | Sobic.010G238400 | cis-zeatin O-glucosyltransferase, putative, expressed | K13495: cis-zeatin O-glucosyltransferase |
| 18 | Sobic.001G210250 | - | - |
| 19 | Sobic.006G115300 | amino acid transporter, putative, expressed | - |
| 20 | Sobic.001G027800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@OsMan05 - Endo-Beta-Mannanase, expressed | K19355: mannan endo-1,4-beta-mannosidase |
Gene co-expression network
Octagon: transcription factors
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