Gene annotation
| Transcriptome id | Sobic.001G027800.2 |
|---|---|
| Synonym | Sb01g002630 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543) OsMan05 - Endo-Beta-Mannanase, expressed |
| UniProt | A0A1Z5S421 |
| Pfam | PF00150 |
| Panther DB | PTHR31451 PTHR31451:SF12 |
| NCBI CDD | - |
| KEGG Orthology | K19355; mannan endo-1,4-beta-mannosidase |
| Gene Ontology | GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds |
Orthologs (automatic annotation)
| TAIR | AT5G66460 : Glycosyl hydrolase superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g61280.1 : OsMan05 - Endo-Beta-Mannanase, expressed |
| MaizeGDB (Corn) | Zm00025a008891 |
| Brachypodium | KQK12361 |
| Barley | HORVU5Hr1G115310.3 , HORVU5Hr1G115310.4 , HORVU5Hr1G115310.5 , HORVU5Hr1G115310.2 |
| Wheat | TraesCS5D02G504800 , TraesCS4A02G368600 , TraesCS5B02G504000 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G272700 | Up-reguralion under drought(PubMedID : 24916767)@expressed protein | - |
| 2 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 3 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 4 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 5 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 6 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 7 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 8 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 9 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 10 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 11 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 12 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 13 | Sobic.001G210200 | RIPER9 - Ripening-related family protein precursor, putative, expressed | - |
| 14 | Sobic.001G164100 | cytochrome P450, putative, expressed | - |
| 15 | Sobic.001G210250 | - | - |
| 16 | Sobic.010G253500 | cycloartenol synthase, putative, expressed | K19011: achilleol B synthase |
| 17 | Sobic.005G215766 | - | - |
| 18 | Sobic.007G073750 | - | - |
| 19 | Sobic.005G158000 | cytochrome P450 71E1, putative, expressed | K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase |
| 20 | Sobic.010G017501 | - | - |
Gene co-expression network
Octagon: transcription factors
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