Gene annotation
| Transcriptome id | Sobic.009G118600.2,Sobic.009G118600.1 |
|---|---|
| Synonym | Sb09g018630, ERF1-2 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) Up-reguralion under drought (PubMedID : 24916767) eukaryotic peptide chain release factor subunit 1-1, putative, expressed |
| UniProt | A0A1Z5R2C2 , C5YX98 |
| Pfam | PF03463 PF03465 PF03464 |
| Panther DB | PTHR10113 PTHR10113:SF11 |
| NCBI CDD | - |
| KEGG Orthology | K03265; ETF1, peptide chain release factor subunit 1 |
| Gene Ontology | GO:0016149; translation release factor activity, codon specific GO:0006415translational termination GO:0005737cytoplasm |
Orthologs (automatic annotation)
| TAIR | AT1G12920 : eukaryotic release factor 1-2 |
|---|---|
| RAP-DB (Rice) | LOC_Os05g31020.1 : eukaryotic peptide chain release factor subunit 1-1, putative, expressed |
| MaizeGDB (Corn) | Zm00025a043300 |
| Brachypodium | KQK13551 , KQK11459 , KQK13547 |
| Barley | HORVU3Hr1G104200.1 , HORVU3Hr1G104200.2 , HORVU3Hr1G104200.3 , HORVU3Hr1G104360.4 , HORVU3Hr1G104360.3 , HORVU3Hr1G104360.2 , HORVU3Hr1G104360.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.009G118600 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G235500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 2 | Sobic.006G115300 | amino acid transporter, putative, expressed | - |
| 3 | Sobic.003G269800 | phosphatidylinositol transfer, putative, expressed | - |
| 4 | Sobic.009G136100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@auxin-induced protein 5NG4, putative, expressed | - |
| 5 | Sobic.006G086100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- | K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1 |
| 6 | Sobic.004G236550 | - | - |
| 7 | Sobic.005G215766 | - | - |
| 8 | Sobic.009G097300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 9 | Sobic.003G332000 | expressed protein | - |
| 10 | Sobic.003G252400 | drought induced 19 protein, putative, expressed | - |
| 11 | Sobic.009G236300 | lectin-like receptor kinase, putative, expressed | - |
| 12 | Sobic.003G397400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein | - |
| 13 | Sobic.003G137900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein | - |
| 14 | Sobic.003G281900 | regulator of chromosome condensation, putative, expressed | - |
| 15 | Sobic.004G353600 | sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed | K15378: solute carrier family 45, member 1/2/4 |
| 16 | Sobic.010G238400 | cis-zeatin O-glucosyltransferase, putative, expressed | K13495: cis-zeatin O-glucosyltransferase |
| 17 | Sobic.005G060600 | - | - |
| 18 | Sobic.003G064300 | - | - |
| 19 | Sobic.003G397500 | expressed protein | - |
| 20 | Sobic.004G124500 | transporter family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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