Gene annotation
Transcriptome id Sobic.003G332000.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6Q6Q2
Pfam PF11891
Panther DB PTHR31620 PTHR31620:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G08640 : Protein of unknown function (DUF3411)
RAP-DB (Rice) LOC_Os01g59740.1 : expressed protein
MaizeGDB (Corn) Zm00025a039812 , Zm00025a027127
Brachypodium KQK10262
Barley HORVU3Hr1G079620.5 , HORVU3Hr1G079620.4 , HORVU3Hr1G079620.1 , HORVU3Hr1G079620.3 , HORVU3Hr1G079620.2
Wheat -
Populus -


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cDNA sequences
Sobic.003G332000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G236550 - -
2 Sobic.004G353600 sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed K15378: solute carrier family 45, member 1/2/4
3 Sobic.003G374700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Sad1 / UNC-like C-terminal domain containing protein, putative, expressed -
4 Sobic.009G118600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
5 Sobic.001G005700 acyl carrier protein, putative, expressed -
6 Sobic.009G136100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@auxin-induced protein 5NG4, putative, expressed -
7 Sobic.002G225300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CPuORF39 - conserved peptide uORF-containing transcript, expressed K09419: heat shock transcription factor, other eukaryote
8 Sobic.009G079300 receptor protein kinase-like, putative, expressed -
9 Sobic.007G131700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
10 Sobic.001G273500 leucine-rich repeat receptor-like protein kinase 1, putative, expressed -
11 Sobic.010G093100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@galactosyltransferase family protein, putative, expressed K14413: beta-1,3-galactosyltransferase
12 Sobic.003G289900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ENTH domain containing protein, expressed K12471: epsin
13 Sobic.007G025800 amino acid transporter, putative, expressed -
14 Sobic.006G115300 amino acid transporter, putative, expressed -
15 Sobic.009G200300 expressed protein -
16 Sobic.003G316300 insulin-degrading enzyme, putative, expressed K01408: IDE, insulysin
17 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
18 Sobic.010G197500 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
19 Sobic.006G217300 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12448: UXE, UDP-arabinose 4-epimerase
20 Sobic.003G378000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/LRR-repeat protein 2, putative, expressed K03875: SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)


Gene co-expression network
sample Sobic003G332000 Sobic003G332000 Sobic004G236550 Sobic004G236550 Sobic003G332000--Sobic004G236550 Sobic004G353600 Sobic004G353600 Sobic003G332000--Sobic004G353600 Sobic003G374700 Sobic003G374700 Sobic003G332000--Sobic003G374700 Sobic009G118600 Sobic009G118600 Sobic003G332000--Sobic009G118600 Sobic001G005700 Sobic001G005700 Sobic003G332000--Sobic001G005700 Sobic009G136100 Sobic009G136100 Sobic003G332000--Sobic009G136100 Sobic002G225300 Sobic002G225300 Sobic003G332000--Sobic002G225300 Sobic009G079300 Sobic009G079300 Sobic003G332000--Sobic009G079300 Sobic007G131700 Sobic007G131700 Sobic003G332000--Sobic007G131700 Sobic004G236550--Sobic009G079300 Sobic002G355200 Sobic002G355200 Sobic004G236550--Sobic002G355200 Sobic004G236550--Sobic009G136100 Sobic004G236550--Sobic003G332000 Sobic006G086100 Sobic006G086100 Sobic004G236550--Sobic006G086100 Sobic005G016800 Sobic005G016800 Sobic004G236550--Sobic005G016800 Sobic004G236550--Sobic009G118600 Sobic006G115300 Sobic006G115300 Sobic004G236550--Sobic006G115300 Sobic004G236550--Sobic002G225300 Sobic003G272400 Sobic003G272400 Sobic004G353600--Sobic003G272400 Sobic002G306000 Sobic002G306000 Sobic004G353600--Sobic002G306000 Sobic006G078300 Sobic006G078300 Sobic004G353600--Sobic006G078300 Sobic003G087100 Sobic003G087100 Sobic004G353600--Sobic003G087100 Sobic003G378000 Sobic003G378000 Sobic004G353600--Sobic003G378000 Sobic001G157400 Sobic001G157400 Sobic004G353600--Sobic001G157400 Sobic004G353600--Sobic003G332000 Sobic001G075800 Sobic001G075800 Sobic004G353600--Sobic001G075800 Sobic006G203000 Sobic006G203000 Sobic004G353600--Sobic006G203000 Sobic006G064800 Sobic006G064800 Sobic003G374700--Sobic006G064800 Sobic003G374700--Sobic003G332000 Sobic003G374700--Sobic004G353600 Sobic003G374700--Sobic004G236550 Sobic008G141800 Sobic008G141800 Sobic003G374700--Sobic008G141800 Sobic009G169400 Sobic009G169400 Sobic003G374700--Sobic009G169400 Sobic004G162200 Sobic004G162200 Sobic003G374700--Sobic004G162200 Sobic003G374700--Sobic002G355200 Sobic001G409900 Sobic001G409900 Sobic003G374700--Sobic001G409900 Sobic001G235500 Sobic001G235500 Sobic009G118600--Sobic001G235500 Sobic009G118600--Sobic006G115300 Sobic003G269800 Sobic003G269800 Sobic009G118600--Sobic003G269800 Sobic009G118600--Sobic009G136100 Sobic009G118600--Sobic006G086100 Sobic009G118600--Sobic004G236550 Sobic005G215766 Sobic005G215766 Sobic009G118600--Sobic005G215766 Sobic009G097300 Sobic009G097300 Sobic009G118600--Sobic009G097300 Sobic009G118600--Sobic003G332000 Sobic004G211301 Sobic004G211301 Sobic001G005700--Sobic004G211301 Sobic002G189000 Sobic002G189000 Sobic001G005700--Sobic002G189000 Sobic010G085400 Sobic010G085400 Sobic001G005700--Sobic010G085400 Sobic009G128300 Sobic009G128300 Sobic001G005700--Sobic009G128300 Sobic002G013900 Sobic002G013900 Sobic001G005700--Sobic002G013900 Sobic003G227600 Sobic003G227600 Sobic001G005700--Sobic003G227600 Sobic009G216900 Sobic009G216900 Sobic001G005700--Sobic009G216900 Sobic003G233900 Sobic003G233900 Sobic001G005700--Sobic003G233900 Sobic003G225900 Sobic003G225900 Sobic001G005700--Sobic003G225900 Sobic009G136100--Sobic001G235500 Sobic009G136100--Sobic009G118600 Sobic009G136100--Sobic004G236550 Sobic009G136100--Sobic009G079300 Sobic003G252400 Sobic003G252400 Sobic009G136100--Sobic003G252400 Sobic009G200300 Sobic009G200300 Sobic009G136100--Sobic009G200300 Sobic009G136100--Sobic001G005700 Sobic009G136100--Sobic004G211301 Sobic009G136100--Sobic006G115300 Sobic002G225300--Sobic004G236550 Sobic004G155200 Sobic004G155200 Sobic002G225300--Sobic004G155200 Sobic002G225300--Sobic001G005700 Sobic003G289900 Sobic003G289900 Sobic002G225300--Sobic003G289900 Sobic007G025800 Sobic007G025800 Sobic002G225300--Sobic007G025800 Sobic002G225300--Sobic007G131700 Sobic001G037150 Sobic001G037150 Sobic002G225300--Sobic001G037150 Sobic002G225300--Sobic003G225900 Sobic002G225300--Sobic003G332000 Sobic009G000200 Sobic009G000200 Sobic009G079300--Sobic009G000200 Sobic009G079300--Sobic004G236550 Sobic003G126300 Sobic003G126300 Sobic009G079300--Sobic003G126300 Sobic003G316300 Sobic003G316300 Sobic009G079300--Sobic003G316300 Sobic009G079300--Sobic007G025800 Sobic001G180900 Sobic001G180900 Sobic009G079300--Sobic001G180900 Sobic009G079300--Sobic003G272400 Sobic009G079300--Sobic009G136100 Sobic003G367300 Sobic003G367300 Sobic009G079300--Sobic003G367300 Sobic007G131700--Sobic003G252400 Sobic007G131700--Sobic006G115300 Sobic002G110200 Sobic002G110200 Sobic007G131700--Sobic002G110200 Sobic003G229000 Sobic003G229000 Sobic007G131700--Sobic003G229000 Sobic007G131700--Sobic002G189000 Sobic007G131700--Sobic007G025800 Sobic010G260300 Sobic010G260300 Sobic007G131700--Sobic010G260300 Sobic007G131700--Sobic002G013900 Sobic002G331450 Sobic002G331450 Sobic007G131700--Sobic002G331450
Octagon: transcription factors


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