Gene annotation
Transcriptome id Sobic.007G025800.2,Sobic.007G025800.1
Synonym Sb07g002260, LHT1
Functional annotation amino acid transporter, putative, expressed
UniProt C5YMK0
Pfam PF03222
Panther DB PTHR22950 PTHR22950:SF235
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology -
Gene Ontology GO:0003333; amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G40780 : lysine histidine transporter 1
RAP-DB (Rice) LOC_Os08g03350.1 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a040346 , Zm00025a040345 , Zm00025a040343 , Zm00025a030209 , Zm00025a040337 , Zm00025a054737 , Zm00025a040338 , Zm00025a040344 , Zm00025a009656
Brachypodium PNT63500 , PNT63501 , PNT76283 , PNT71577 , KQJ94928 , KQJ94929
Barley HORVU1Hr1G011920.2 , HORVU1Hr1G011920.1 , HORVU7Hr1G032060.4 , HORVU7Hr1G032060.5 , HORVU7Hr1G032060.2 , HORVU7Hr1G032060.3 , HORVU7Hr1G032060.1 , HORVU7Hr1G074640.12 , HORVU7Hr1G074640.13 , HORVU7Hr1G074640.10 , HORVU7Hr1G074640.11 , HORVU7Hr1G074640.16 , HORVU7Hr1G074640.17 , HORVU7Hr1G074640.14 , HORVU7Hr1G074640.15 , HORVU7Hr1G074640.18 , HORVU7Hr1G074640.19 , HORVU7Hr1G074640.2 , HORVU7Hr1G074640.3 , HORVU7Hr1G074640.4 , HORVU7Hr1G074640.5 , HORVU7Hr1G074640.6 , HORVU7Hr1G074640.7 , HORVU7Hr1G074640.23 , HORVU7Hr1G074640.22 , HORVU7Hr1G074640.21 , HORVU7Hr1G074640.27 , HORVU7Hr1G074640.26 , HORVU7Hr1G074640.25 , HORVU7Hr1G074640.24 , HORVU7Hr1G074640.9 , HORVU7Hr1G074660.6 , HORVU7Hr1G074660.7 , HORVU7Hr1G074660.4 , HORVU7Hr1G074660.5 , HORVU7Hr1G074660.2 , HORVU7Hr1G074660.3 , HORVU7Hr1G074660.1 , HORVU7Hr1G074660.8 , HORVU7Hr1G074660.9 , HORVU2Hr1G123160.3 , HORVU2Hr1G123160.2 , HORVU2Hr1G123160.1 , HORVU2Hr1G123160.7 , HORVU2Hr1G123160.6 , HORVU2Hr1G123160.5 , HORVU2Hr1G123160.4 , HORVU7Hr1G074660.10 , HORVU7Hr1G074660.11 , HORVU7Hr1G074660.12 , HORVU7Hr1G074640.8
Wheat TraesCS7B02G060400 , TraesCS7A02G312800 , TraesCS7D02G157000 , TraesCS2A02G584328 , TraesCS7A02G313000 , TraesCS7B02G213000 , TraesCS2B02G602449 , TraesCS7A02G156600 , TraesCS7B02G212500 , TraesCS7D02G309400 , TraesCS2D02G595500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G260300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.002G271100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
3 Sobic.003G225900 expressed protein -
4 Sobic.009G079300 receptor protein kinase-like, putative, expressed -
5 Sobic.002G189000 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
6 Sobic.007G131700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
7 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
8 Sobic.004G236550 - -
9 Sobic.003G229000 cytochrome P450 72A1, putative, expressed -
10 Sobic.009G183000 - -
11 Sobic.003G291600 receptor-like protein kinase 5 precursor, putative, expressed -
12 Sobic.009G136100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@auxin-induced protein 5NG4, putative, expressed -
13 Sobic.001G005700 acyl carrier protein, putative, expressed -
14 Sobic.003G141800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@polygalacturonase, putative, expressed -
15 Sobic.009G135100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipase, putative, expressed -
16 Sobic.002G225300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CPuORF39 - conserved peptide uORF-containing transcript, expressed K09419: heat shock transcription factor, other eukaryote
17 Sobic.005G209500 expressed protein -
18 Sobic.010G265600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Protein of unknown function (DUF581)(PubMedID : 28640841)@DUF581 domain containing protein, expressed -
19 Sobic.004G155150 - -
20 Sobic.002G276400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G025800 Sobic007G025800 Sobic010G260300 Sobic010G260300 Sobic007G025800--Sobic010G260300 Sobic002G271100 Sobic002G271100 Sobic007G025800--Sobic002G271100 Sobic003G225900 Sobic003G225900 Sobic007G025800--Sobic003G225900 Sobic009G079300 Sobic009G079300 Sobic007G025800--Sobic009G079300 Sobic002G189000 Sobic002G189000 Sobic007G025800--Sobic002G189000 Sobic007G131700 Sobic007G131700 Sobic007G025800--Sobic007G131700 Sobic006G267900 Sobic006G267900 Sobic007G025800--Sobic006G267900 Sobic004G236550 Sobic004G236550 Sobic007G025800--Sobic004G236550 Sobic003G229000 Sobic003G229000 Sobic007G025800--Sobic003G229000 Sobic010G260300--Sobic002G189000 Sobic010G260300--Sobic003G229000 Sobic009G183000 Sobic009G183000 Sobic010G260300--Sobic009G183000 Sobic010G260300--Sobic007G025800 Sobic010G260300--Sobic002G271100 Sobic010G260300--Sobic003G225900 Sobic004G155150 Sobic004G155150 Sobic010G260300--Sobic004G155150 Sobic003G233900 Sobic003G233900 Sobic010G260300--Sobic003G233900 Sobic003G198150 Sobic003G198150 Sobic010G260300--Sobic003G198150 Sobic002G271100--Sobic002G189000 Sobic002G271100--Sobic006G267900 Sobic003G373150 Sobic003G373150 Sobic002G271100--Sobic003G373150 Sobic002G271100--Sobic003G225900 Sobic002G271100--Sobic004G155150 Sobic002G013900 Sobic002G013900 Sobic002G271100--Sobic002G013900 Sobic002G271100--Sobic003G233900 Sobic002G271100--Sobic010G260300 Sobic009G000700 Sobic009G000700 Sobic002G271100--Sobic009G000700 Sobic003G225900--Sobic006G267900 Sobic003G225900--Sobic002G189000 Sobic003G225900--Sobic002G271100 Sobic002G427400 Sobic002G427400 Sobic003G225900--Sobic002G427400 Sobic003G225900--Sobic003G373150 Sobic001G081600 Sobic001G081600 Sobic003G225900--Sobic001G081600 Sobic003G225900--Sobic010G260300 Sobic005G087800 Sobic005G087800 Sobic003G225900--Sobic005G087800 Sobic004G283201 Sobic004G283201 Sobic003G225900--Sobic004G283201 Sobic009G000200 Sobic009G000200 Sobic009G079300--Sobic009G000200 Sobic009G079300--Sobic004G236550 Sobic003G126300 Sobic003G126300 Sobic009G079300--Sobic003G126300 Sobic003G316300 Sobic003G316300 Sobic009G079300--Sobic003G316300 Sobic009G079300--Sobic007G025800 Sobic001G180900 Sobic001G180900 Sobic009G079300--Sobic001G180900 Sobic003G272400 Sobic003G272400 Sobic009G079300--Sobic003G272400 Sobic009G136100 Sobic009G136100 Sobic009G079300--Sobic009G136100 Sobic003G367300 Sobic003G367300 Sobic009G079300--Sobic003G367300 Sobic002G189000--Sobic002G013900 Sobic002G189000--Sobic003G233900 Sobic002G189000--Sobic002G271100 Sobic002G189000--Sobic010G260300 Sobic009G128300 Sobic009G128300 Sobic002G189000--Sobic009G128300 Sobic002G110200 Sobic002G110200 Sobic002G189000--Sobic002G110200 Sobic002G189000--Sobic003G225900 Sobic002G189000--Sobic004G155150 Sobic004G285100 Sobic004G285100 Sobic002G189000--Sobic004G285100 Sobic003G252400 Sobic003G252400 Sobic007G131700--Sobic003G252400 Sobic006G115300 Sobic006G115300 Sobic007G131700--Sobic006G115300 Sobic007G131700--Sobic002G110200 Sobic007G131700--Sobic003G229000 Sobic007G131700--Sobic002G189000 Sobic007G131700--Sobic007G025800 Sobic007G131700--Sobic010G260300 Sobic007G131700--Sobic002G013900 Sobic002G331450 Sobic002G331450 Sobic007G131700--Sobic002G331450 Sobic006G267900--Sobic009G000700 Sobic010G006700 Sobic010G006700 Sobic006G267900--Sobic010G006700 Sobic004G310600 Sobic004G310600 Sobic006G267900--Sobic004G310600 Sobic003G078501 Sobic003G078501 Sobic006G267900--Sobic003G078501 Sobic001G125100 Sobic001G125100 Sobic006G267900--Sobic001G125100 Sobic006G267900--Sobic004G155150 Sobic006G267900--Sobic003G373150 Sobic003G367350 Sobic003G367350 Sobic006G267900--Sobic003G367350 Sobic004G331300 Sobic004G331300 Sobic006G267900--Sobic004G331300 Sobic004G236550--Sobic009G079300 Sobic002G355200 Sobic002G355200 Sobic004G236550--Sobic002G355200 Sobic004G236550--Sobic009G136100 Sobic003G332000 Sobic003G332000 Sobic004G236550--Sobic003G332000 Sobic006G086100 Sobic006G086100 Sobic004G236550--Sobic006G086100 Sobic005G016800 Sobic005G016800 Sobic004G236550--Sobic005G016800 Sobic009G118600 Sobic009G118600 Sobic004G236550--Sobic009G118600 Sobic004G236550--Sobic006G115300 Sobic002G225300 Sobic002G225300 Sobic004G236550--Sobic002G225300 Sobic003G229000--Sobic010G260300 Sobic003G229000--Sobic002G189000 Sobic003G229000--Sobic003G252400 Sobic003G229000--Sobic002G110200 Sobic003G229000--Sobic007G131700 Sobic003G229000--Sobic002G013900 Sobic003G291600 Sobic003G291600 Sobic003G229000--Sobic003G291600 Sobic005G209500 Sobic005G209500 Sobic003G229000--Sobic005G209500 Sobic003G229000--Sobic009G128300
Octagon: transcription factors


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