Gene annotation
Transcriptome id Sobic.002G189000.1
Synonym ATHB1, HAT5, Sb02g023650, ATHB-1, HD-ZIP-1, HB-1
Functional annotation homeobox associated leucine zipper, putative, expressed
UniProt C5XBF6
Pfam PF02183 PF00046
Panther DB PTHR24326 PTHR24326:SF215
NCBI CDD KOG0484; Transcription factor PHOX2/ARIX, contains HOX domain
KEGG Orthology K09338; homeobox-leucine zipper protein
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G01470 : homeobox 1
RAP-DB (Rice) LOC_Os09g21180.1 : homeobox associated leucine zipper, putative, expressed
MaizeGDB (Corn) Zm00025a031035 , Zm00025a013843 , Zm00025a006091
Brachypodium KQJ90092 , KQK01491 , KQJ98272
Barley HORVU2Hr1G092300.1 , HORVU5Hr1G059410.8 , HORVU5Hr1G059410.6 , HORVU5Hr1G059410.7 , HORVU5Hr1G059410.2 , HORVU5Hr1G059410.3 , HORVU5Hr1G059410.1 , HORVU2Hr1G092290.6 , HORVU2Hr1G092290.7 , HORVU2Hr1G092290.4 , HORVU2Hr1G092290.5 , HORVU2Hr1G092290.2 , HORVU2Hr1G092290.3
Wheat TraesCS5A02G199300 , TraesCS6B02G321100 , TraesCS6D02G272000 , TraesCS6D02G272000 , TraesCS5A02G249000 , TraesCS5B02G197700 , TraesCS6A02G290800 , TraesCS5D02G205000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G013900 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
2 Sobic.003G233900 - -
3 Sobic.002G271100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
4 Sobic.010G260300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.009G128300 CUE domain containing protein, expressed -
6 Sobic.002G110200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
7 Sobic.003G225900 expressed protein -
8 Sobic.004G155150 - -
9 Sobic.004G285100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
10 Sobic.005G087800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
11 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
12 Sobic.003G066900 expressed protein -
13 Sobic.002G182800 expressed protein -
14 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
15 Sobic.003G141800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@polygalacturonase, putative, expressed -
16 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
17 Sobic.004G257350 - -
18 Sobic.010G085400 down-regulated TF in developmental senescence(PubMedID : 27586543)@OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
19 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
20 Sobic.003G234800 membrane associated DUF588 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G189000 Sobic002G189000 Sobic002G013900 Sobic002G013900 Sobic002G189000--Sobic002G013900 Sobic003G233900 Sobic003G233900 Sobic002G189000--Sobic003G233900 Sobic002G271100 Sobic002G271100 Sobic002G189000--Sobic002G271100 Sobic010G260300 Sobic010G260300 Sobic002G189000--Sobic010G260300 Sobic009G128300 Sobic009G128300 Sobic002G189000--Sobic009G128300 Sobic002G110200 Sobic002G110200 Sobic002G189000--Sobic002G110200 Sobic003G225900 Sobic003G225900 Sobic002G189000--Sobic003G225900 Sobic004G155150 Sobic004G155150 Sobic002G189000--Sobic004G155150 Sobic004G285100 Sobic004G285100 Sobic002G189000--Sobic004G285100 Sobic002G013900--Sobic003G233900 Sobic002G013900--Sobic009G128300 Sobic002G013900--Sobic002G110200 Sobic002G013900--Sobic002G189000 Sobic002G182800 Sobic002G182800 Sobic002G013900--Sobic002G182800 Sobic002G331450 Sobic002G331450 Sobic002G013900--Sobic002G331450 Sobic003G227600 Sobic003G227600 Sobic002G013900--Sobic003G227600 Sobic010G085400 Sobic010G085400 Sobic002G013900--Sobic010G085400 Sobic003G040800 Sobic003G040800 Sobic002G013900--Sobic003G040800 Sobic003G233900--Sobic009G128300 Sobic003G233900--Sobic003G227600 Sobic003G233900--Sobic002G182800 Sobic003G233900--Sobic003G040800 Sobic009G000700 Sobic009G000700 Sobic003G233900--Sobic009G000700 Sobic009G216900 Sobic009G216900 Sobic003G233900--Sobic009G216900 Sobic004G257350 Sobic004G257350 Sobic003G233900--Sobic004G257350 Sobic003G066900 Sobic003G066900 Sobic003G233900--Sobic003G066900 Sobic003G233900--Sobic004G285100 Sobic002G271100--Sobic002G189000 Sobic006G267900 Sobic006G267900 Sobic002G271100--Sobic006G267900 Sobic003G373150 Sobic003G373150 Sobic002G271100--Sobic003G373150 Sobic002G271100--Sobic003G225900 Sobic002G271100--Sobic004G155150 Sobic002G271100--Sobic002G013900 Sobic002G271100--Sobic003G233900 Sobic002G271100--Sobic010G260300 Sobic002G271100--Sobic009G000700 Sobic010G260300--Sobic002G189000 Sobic003G229000 Sobic003G229000 Sobic010G260300--Sobic003G229000 Sobic009G183000 Sobic009G183000 Sobic010G260300--Sobic009G183000 Sobic007G025800 Sobic007G025800 Sobic010G260300--Sobic007G025800 Sobic010G260300--Sobic002G271100 Sobic010G260300--Sobic003G225900 Sobic010G260300--Sobic004G155150 Sobic010G260300--Sobic003G233900 Sobic003G198150 Sobic003G198150 Sobic010G260300--Sobic003G198150 Sobic009G128300--Sobic002G182800 Sobic009G128300--Sobic003G233900 Sobic009G128300--Sobic003G227600 Sobic001G509400 Sobic001G509400 Sobic009G128300--Sobic001G509400 Sobic002G342100 Sobic002G342100 Sobic009G128300--Sobic002G342100 Sobic009G128300--Sobic002G331450 Sobic008G044750 Sobic008G044750 Sobic009G128300--Sobic008G044750 Sobic003G079800 Sobic003G079800 Sobic009G128300--Sobic003G079800 Sobic001G075101 Sobic001G075101 Sobic009G128300--Sobic001G075101 Sobic002G110200--Sobic002G331450 Sobic002G110200--Sobic001G075101 Sobic006G203000 Sobic006G203000 Sobic002G110200--Sobic006G203000 Sobic007G169600 Sobic007G169600 Sobic002G110200--Sobic007G169600 Sobic002G110200--Sobic009G128300 Sobic002G110200--Sobic002G182800 Sobic002G110200--Sobic002G013900 Sobic002G110200--Sobic001G509400 Sobic004G170032 Sobic004G170032 Sobic002G110200--Sobic004G170032 Sobic003G225900--Sobic006G267900 Sobic003G225900--Sobic002G189000 Sobic003G225900--Sobic002G271100 Sobic002G427400 Sobic002G427400 Sobic003G225900--Sobic002G427400 Sobic003G225900--Sobic003G373150 Sobic001G081600 Sobic001G081600 Sobic003G225900--Sobic001G081600 Sobic003G225900--Sobic010G260300 Sobic005G087800 Sobic005G087800 Sobic003G225900--Sobic005G087800 Sobic004G283201 Sobic004G283201 Sobic003G225900--Sobic004G283201 Sobic004G155150--Sobic009G000700 Sobic004G310600 Sobic004G310600 Sobic004G155150--Sobic004G310600 Sobic003G078501 Sobic003G078501 Sobic004G155150--Sobic003G078501 Sobic004G155150--Sobic003G233900 Sobic004G155150--Sobic006G267900 Sobic010G006700 Sobic010G006700 Sobic004G155150--Sobic010G006700 Sobic004G155150--Sobic004G257350 Sobic004G155150--Sobic003G373150 Sobic001G125100 Sobic001G125100 Sobic004G155150--Sobic001G125100 Sobic004G285100--Sobic003G233900 Sobic004G285100--Sobic003G040800 Sobic004G285100--Sobic004G310600 Sobic004G285100--Sobic009G000700 Sobic001G106000 Sobic001G106000 Sobic004G285100--Sobic001G106000 Sobic004G285100--Sobic005G087800 Sobic004G285100--Sobic009G128300 Sobic004G285100--Sobic003G227600 Sobic004G285100--Sobic004G155150
Octagon: transcription factors


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