Gene annotation
Transcriptome id Sobic.004G310600.1
Synonym ethylene response factor 55, SbERF55;prominent TF regulators with AP2 domain for host defense, Sb04g034290
Functional annotation Not investigated (PubMedID : 23766026)
transcription factor (PubMedID : 30367619)
AP2 domain containing protein, expressed
UniProt C5XSW4
Pfam PF00847
Panther DB PTHR31985 PTHR31985:SF32
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G21910 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os06g10780.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049596 , Zm00025a045338 , Zm00025a033087 , Zm00025a042509 , Zm00025a022237
Brachypodium KQK01731 , KQK22459 , KQK19045
Barley HORVU7Hr1G035440.1 , HORVU6Hr1G080340.12 , HORVU6Hr1G080340.11 , HORVU4Hr1G061340.1 , HORVU6Hr1G080340.9
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
2 Sobic.003G078501 - -
3 Sobic.010G006700 auxin-induced protein 5NG4, putative, expressed -
4 Sobic.003G373150 - -
5 Sobic.004G155150 - -
6 Sobic.004G331300 AP2 domain containing protein, expressed -
7 Sobic.003G233900 - -
8 Sobic.004G257350 - -
9 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
10 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
11 Sobic.001G159850 - -
12 Sobic.001G159850 - -
13 Sobic.001G159850 - -
14 Sobic.001G159850 - -
15 Sobic.001G159850 - -
16 Sobic.001G159850 - -
17 Sobic.001G159850 - -
18 Sobic.001G159850 - -
19 Sobic.001G159850 - -
20 Sobic.001G159850 - -


Gene co-expression network
sample Sobic004G310600 Sobic004G310600 Sobic009G000700 Sobic009G000700 Sobic004G310600--Sobic009G000700 Sobic003G078501 Sobic003G078501 Sobic004G310600--Sobic003G078501 Sobic010G006700 Sobic010G006700 Sobic004G310600--Sobic010G006700 Sobic003G373150 Sobic003G373150 Sobic004G310600--Sobic003G373150 Sobic004G155150 Sobic004G155150 Sobic004G310600--Sobic004G155150 Sobic004G331300 Sobic004G331300 Sobic004G310600--Sobic004G331300 Sobic003G233900 Sobic003G233900 Sobic004G310600--Sobic003G233900 Sobic004G257350 Sobic004G257350 Sobic004G310600--Sobic004G257350 Sobic006G267900 Sobic006G267900 Sobic004G310600--Sobic006G267900 Sobic009G000700--Sobic004G310600 Sobic009G000700--Sobic003G078501 Sobic009G000700--Sobic004G155150 Sobic009G000700--Sobic010G006700 Sobic009G000700--Sobic004G331300 Sobic009G000700--Sobic003G233900 Sobic009G000700--Sobic003G373150 Sobic009G000700--Sobic006G267900 Sobic001G125100 Sobic001G125100 Sobic009G000700--Sobic001G125100 Sobic003G078501--Sobic004G310600 Sobic003G078501--Sobic009G000700 Sobic003G078501--Sobic010G006700 Sobic003G078501--Sobic001G125100 Sobic001G159850 Sobic001G159850 Sobic003G078501--Sobic001G159850 Sobic010G006700--Sobic004G331300 Sobic010G006700--Sobic003G078501 Sobic010G006700--Sobic009G000700 Sobic010G006700--Sobic001G159850 Sobic003G373150--Sobic004G310600 Sobic003G373150--Sobic001G125100 Sobic003G373150--Sobic009G000700 Sobic003G373150--Sobic010G006700 Sobic004G283201 Sobic004G283201 Sobic003G373150--Sobic004G283201 Sobic003G373150--Sobic003G078501 Sobic006G055600 Sobic006G055600 Sobic003G373150--Sobic006G055600 Sobic003G373150--Sobic006G267900 Sobic004G278200 Sobic004G278200 Sobic003G373150--Sobic004G278200 Sobic004G155150--Sobic009G000700 Sobic004G155150--Sobic004G310600 Sobic004G155150--Sobic003G078501 Sobic004G155150--Sobic003G233900 Sobic004G155150--Sobic006G267900 Sobic004G155150--Sobic010G006700 Sobic004G155150--Sobic004G257350 Sobic004G155150--Sobic003G373150 Sobic004G155150--Sobic001G125100 Sobic004G331300--Sobic001G159850 Sobic009G128300 Sobic009G128300 Sobic003G233900--Sobic009G128300 Sobic003G227600 Sobic003G227600 Sobic003G233900--Sobic003G227600 Sobic002G182800 Sobic002G182800 Sobic003G233900--Sobic002G182800 Sobic003G040800 Sobic003G040800 Sobic003G233900--Sobic003G040800 Sobic003G233900--Sobic009G000700 Sobic009G216900 Sobic009G216900 Sobic003G233900--Sobic009G216900 Sobic003G233900--Sobic004G257350 Sobic003G066900 Sobic003G066900 Sobic003G233900--Sobic003G066900 Sobic004G285100 Sobic004G285100 Sobic003G233900--Sobic004G285100 Sobic004G257350--Sobic003G233900 Sobic004G257350--Sobic004G310600 Sobic004G257350--Sobic009G000700 Sobic004G257350--Sobic004G155150 Sobic004G257350--Sobic003G040800 Sobic004G257350--Sobic003G227600 Sobic004G257350--Sobic009G128300 Sobic004G257350--Sobic003G066900 Sobic004G257350--Sobic003G078501 Sobic006G267900--Sobic009G000700 Sobic006G267900--Sobic010G006700 Sobic006G267900--Sobic004G310600 Sobic006G267900--Sobic003G078501 Sobic006G267900--Sobic001G125100 Sobic006G267900--Sobic004G155150 Sobic006G267900--Sobic003G373150 Sobic003G367350 Sobic003G367350 Sobic006G267900--Sobic003G367350 Sobic006G267900--Sobic004G331300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.