Gene annotation
Transcriptome id Sobic.001G125100.5,Sobic.001G125100.3,Sobic.001G125100.4,Sobic.001G125100.1,Sobic.001G125100.2,Sobic.001G125100.6,Sobic.001G125100.7
Synonym Sb01g011000
Functional annotation pre-mRNA-splicing factor, putative, expressed
UniProt A0A1B6QIN1 , C5WNU4 , A0A1Z5S5E8 , A0A1Z5S5D3
Pfam PF02840 PF08799 PF08799 PF02840
Panther DB PTHR13007 PTHR13007:SF20
NCBI CDD KOG2808; U5 snRNP-associated RNA splicing factor
KEGG Orthology K12817; PRPF18, pre-mRNA-splicing factor 18
Gene Ontology GO:0008380; RNA splicing GO:0005681spliceosomal complex


Orthologs (automatic annotation)
TAIR AT1G03140 : splicing factor Prp18 family protein
RAP-DB (Rice) LOC_Os03g49430.1 : pre-mRNA-splicing factor, putative, expressed
MaizeGDB (Corn) Zm00025a017054
Brachypodium KQK13656
Barley HORVU4Hr1G006120.1
Wheat -
Populus PNT37871


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G078501 - -
2 Sobic.010G006700 auxin-induced protein 5NG4, putative, expressed -
3 Sobic.003G373150 - -
4 Sobic.001G159850 - -
5 Sobic.001G159850 - -
6 Sobic.001G159850 - -
7 Sobic.001G159850 - -
8 Sobic.001G159850 - -
9 Sobic.001G159850 - -
10 Sobic.001G159850 - -
11 Sobic.001G159850 - -
12 Sobic.001G159850 - -
13 Sobic.001G159850 - -
14 Sobic.001G159850 - -
15 Sobic.001G159850 - -
16 Sobic.001G159850 - -
17 Sobic.001G159850 - -
18 Sobic.004G331300 AP2 domain containing protein, expressed -
19 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
20 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G125100 Sobic001G125100 Sobic003G078501 Sobic003G078501 Sobic001G125100--Sobic003G078501 Sobic010G006700 Sobic010G006700 Sobic001G125100--Sobic010G006700 Sobic003G373150 Sobic003G373150 Sobic001G125100--Sobic003G373150 Sobic001G159850 Sobic001G159850 Sobic001G125100--Sobic001G159850 Sobic004G310600 Sobic004G310600 Sobic003G078501--Sobic004G310600 Sobic009G000700 Sobic009G000700 Sobic003G078501--Sobic009G000700 Sobic003G078501--Sobic010G006700 Sobic003G078501--Sobic001G125100 Sobic003G078501--Sobic001G159850 Sobic004G331300 Sobic004G331300 Sobic010G006700--Sobic004G331300 Sobic010G006700--Sobic003G078501 Sobic010G006700--Sobic009G000700 Sobic010G006700--Sobic001G159850 Sobic003G373150--Sobic004G310600 Sobic003G373150--Sobic001G125100 Sobic003G373150--Sobic009G000700 Sobic003G373150--Sobic010G006700 Sobic004G283201 Sobic004G283201 Sobic003G373150--Sobic004G283201 Sobic003G373150--Sobic003G078501 Sobic006G055600 Sobic006G055600 Sobic003G373150--Sobic006G055600 Sobic006G267900 Sobic006G267900 Sobic003G373150--Sobic006G267900 Sobic004G278200 Sobic004G278200 Sobic003G373150--Sobic004G278200 Sobic001G159850--Sobic001G159850
Octagon: transcription factors


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