Gene annotation
Transcriptome id Sobic.002G271100.3
Synonym HSFB2B, Sb02g030490, AT-HSFB2B
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
HSF-type DNA-binding domain containing protein, expressed
UniProt A0A1W0W624 , C6JS43
Pfam PF00447
Panther DB PTHR10015 PTHR10015:SF194
NCBI CDD -
KEGG Orthology K09419; heat shock transcription factor, other eukaryote
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G62020 : heat shock transcription factor B2A
RAP-DB (Rice) LOC_Os09g35790.2 : HSF-type DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047239 , Zm00025a045167 , Zm00025a005373 , Zm00025a015267 , Zm00025a040051 , Zm00025a051078 , Zm00025a048930 , Zm00025a047752 , Zm00025a002613 , Zm00025a014026 , Zm00025a033648
Brachypodium KQK13249 , KQK14978 , KQK14979 , PNT68735 , KQK18031 , KQK12714 , KQK18032 , KQJ99265 , PNT77358 , PNT72861 , PNT72862 , KQK13250 , KQJ91133 , KQJ99684 , PNT74158 , PNT74157 , PNT74156 , PNT74155 , KQK21569 , KQK23525 , KQK09735 , KQK23526
Barley HORVU5Hr1G068100.1 , HORVU5Hr1G068100.2 , HORVU5Hr1G068100.3 , HORVU2Hr1G026020.1 , HORVU3Hr1G071550.3 , HORVU3Hr1G071550.2 , HORVU3Hr1G071550.4 , HORVU7Hr1G088920.2 , HORVU7Hr1G088920.3 , HORVU7Hr1G088920.1 , HORVU5Hr1G080840.1 , HORVU7Hr1G056820.1 , HORVU7Hr1G056820.2 , HORVU7Hr1G056820.3 , HORVU7Hr1G056820.4 , HORVU5Hr1G105770.4 , HORVU5Hr1G105770.1 , HORVU5Hr1G105770.3 , HORVU5Hr1G105770.2
Wheat TraesCS7D02G270600 , TraesCS7D02G270600 , TraesCS5B02G315600 , TraesCS5B02G315600 , TraesCS5B02G236100 , TraesCS7B02G168300 , TraesCS2D02G211400 , TraesCS2D02G211400 , TraesCS3A02G289200 , TraesCS2A02G146600 , TraesCS7A02G355300 , TraesCS7D02G367700 , TraesCS5A02G237600 , TraesCS2B02G171900 , TraesCS2B02G232000 , TraesCS2B02G232000 , TraesCS5A02G314700 , TraesCS7A02G270100 , TraesCS7A02G270100 , TraesCS2A02G204500 , TraesCS2A02G204500 , TraesCS5D02G321000 , TraesCS7B02G272500 , TraesCS5D02G243900 , TraesCS7B02G168300 , TraesCS2D02G151200
Populus -


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cDNA sequences
Sobic.002G271100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G189000 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
2 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
3 Sobic.003G373150 - -
4 Sobic.003G225900 expressed protein -
5 Sobic.004G155150 - -
6 Sobic.002G013900 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
7 Sobic.003G233900 - -
8 Sobic.010G260300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
10 Sobic.004G283201 - -
11 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
12 Sobic.001G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
13 Sobic.007G025800 amino acid transporter, putative, expressed -
14 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
15 Sobic.003G078501 - -
16 Sobic.003G141800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@polygalacturonase, putative, expressed -
17 Sobic.006G055600 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
18 Sobic.004G285100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
19 Sobic.010G006700 auxin-induced protein 5NG4, putative, expressed -
20 Sobic.004G283300 AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic002G271100 Sobic002G271100 Sobic002G189000 Sobic002G189000 Sobic002G271100--Sobic002G189000 Sobic006G267900 Sobic006G267900 Sobic002G271100--Sobic006G267900 Sobic003G373150 Sobic003G373150 Sobic002G271100--Sobic003G373150 Sobic003G225900 Sobic003G225900 Sobic002G271100--Sobic003G225900 Sobic004G155150 Sobic004G155150 Sobic002G271100--Sobic004G155150 Sobic002G013900 Sobic002G013900 Sobic002G271100--Sobic002G013900 Sobic003G233900 Sobic003G233900 Sobic002G271100--Sobic003G233900 Sobic010G260300 Sobic010G260300 Sobic002G271100--Sobic010G260300 Sobic009G000700 Sobic009G000700 Sobic002G271100--Sobic009G000700 Sobic002G189000--Sobic002G013900 Sobic002G189000--Sobic003G233900 Sobic002G189000--Sobic002G271100 Sobic002G189000--Sobic010G260300 Sobic009G128300 Sobic009G128300 Sobic002G189000--Sobic009G128300 Sobic002G110200 Sobic002G110200 Sobic002G189000--Sobic002G110200 Sobic002G189000--Sobic003G225900 Sobic002G189000--Sobic004G155150 Sobic004G285100 Sobic004G285100 Sobic002G189000--Sobic004G285100 Sobic006G267900--Sobic009G000700 Sobic010G006700 Sobic010G006700 Sobic006G267900--Sobic010G006700 Sobic004G310600 Sobic004G310600 Sobic006G267900--Sobic004G310600 Sobic003G078501 Sobic003G078501 Sobic006G267900--Sobic003G078501 Sobic001G125100 Sobic001G125100 Sobic006G267900--Sobic001G125100 Sobic006G267900--Sobic004G155150 Sobic006G267900--Sobic003G373150 Sobic003G367350 Sobic003G367350 Sobic006G267900--Sobic003G367350 Sobic004G331300 Sobic004G331300 Sobic006G267900--Sobic004G331300 Sobic003G373150--Sobic004G310600 Sobic003G373150--Sobic001G125100 Sobic003G373150--Sobic009G000700 Sobic003G373150--Sobic010G006700 Sobic004G283201 Sobic004G283201 Sobic003G373150--Sobic004G283201 Sobic003G373150--Sobic003G078501 Sobic006G055600 Sobic006G055600 Sobic003G373150--Sobic006G055600 Sobic003G373150--Sobic006G267900 Sobic004G278200 Sobic004G278200 Sobic003G373150--Sobic004G278200 Sobic003G225900--Sobic006G267900 Sobic003G225900--Sobic002G189000 Sobic003G225900--Sobic002G271100 Sobic002G427400 Sobic002G427400 Sobic003G225900--Sobic002G427400 Sobic003G225900--Sobic003G373150 Sobic001G081600 Sobic001G081600 Sobic003G225900--Sobic001G081600 Sobic003G225900--Sobic010G260300 Sobic005G087800 Sobic005G087800 Sobic003G225900--Sobic005G087800 Sobic003G225900--Sobic004G283201 Sobic004G155150--Sobic009G000700 Sobic004G155150--Sobic004G310600 Sobic004G155150--Sobic003G078501 Sobic004G155150--Sobic003G233900 Sobic004G155150--Sobic006G267900 Sobic004G155150--Sobic010G006700 Sobic004G257350 Sobic004G257350 Sobic004G155150--Sobic004G257350 Sobic004G155150--Sobic003G373150 Sobic004G155150--Sobic001G125100 Sobic002G013900--Sobic003G233900 Sobic002G013900--Sobic009G128300 Sobic002G013900--Sobic002G110200 Sobic002G013900--Sobic002G189000 Sobic002G182800 Sobic002G182800 Sobic002G013900--Sobic002G182800 Sobic002G331450 Sobic002G331450 Sobic002G013900--Sobic002G331450 Sobic003G227600 Sobic003G227600 Sobic002G013900--Sobic003G227600 Sobic010G085400 Sobic010G085400 Sobic002G013900--Sobic010G085400 Sobic003G040800 Sobic003G040800 Sobic002G013900--Sobic003G040800 Sobic003G233900--Sobic009G128300 Sobic003G233900--Sobic003G227600 Sobic003G233900--Sobic002G182800 Sobic003G233900--Sobic003G040800 Sobic003G233900--Sobic009G000700 Sobic009G216900 Sobic009G216900 Sobic003G233900--Sobic009G216900 Sobic003G233900--Sobic004G257350 Sobic003G066900 Sobic003G066900 Sobic003G233900--Sobic003G066900 Sobic003G233900--Sobic004G285100 Sobic010G260300--Sobic002G189000 Sobic003G229000 Sobic003G229000 Sobic010G260300--Sobic003G229000 Sobic009G183000 Sobic009G183000 Sobic010G260300--Sobic009G183000 Sobic007G025800 Sobic007G025800 Sobic010G260300--Sobic007G025800 Sobic010G260300--Sobic002G271100 Sobic010G260300--Sobic003G225900 Sobic010G260300--Sobic004G155150 Sobic010G260300--Sobic003G233900 Sobic003G198150 Sobic003G198150 Sobic010G260300--Sobic003G198150 Sobic009G000700--Sobic004G310600 Sobic009G000700--Sobic003G078501 Sobic009G000700--Sobic004G155150 Sobic009G000700--Sobic010G006700 Sobic009G000700--Sobic004G331300 Sobic009G000700--Sobic003G233900 Sobic009G000700--Sobic003G373150 Sobic009G000700--Sobic006G267900 Sobic009G000700--Sobic001G125100
Octagon: transcription factors


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