Gene annotation
Transcriptome id Sobic.001G243000.1
Synonym Sb01g021490, HSFA6B, AT-HSFA6B
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
heat stress transcription factor, putative, expressed
UniProt C5X1F4
Pfam PF00447
Panther DB PTHR10015 PTHR10015:SF151
NCBI CDD KOG0627; Heat shock transcription factor
KEGG Orthology K09419; heat shock transcription factor, other eukaryote
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G22830 : heat shock transcription factor A6B
RAP-DB (Rice) LOC_Os10g28340.5 : heat stress transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a008110 , Zm00025a020093 , Zm00025a028347 , Zm00025a038597 , Zm00025a033648 , Zm00025a006888
Brachypodium KQJ96747 , KQJ96748 , KQJ96749 , PNT67394 , PNT67393 , PNT72861 , PNT72862 , KQJ99525 , KQJ96751 , KQJ96750 , KQK20612 , KQK20613 , KQK09735
Barley HORVU1Hr1G083420.8 , HORVU1Hr1G083420.9 , HORVU1Hr1G083420.4 , HORVU1Hr1G083420.5 , HORVU1Hr1G083420.6 , HORVU1Hr1G083420.7 , HORVU1Hr1G083420.1 , HORVU1Hr1G083420.2 , HORVU1Hr1G083420.3 , HORVU1Hr1G083420.18 , HORVU1Hr1G083420.16 , HORVU1Hr1G083420.17 , HORVU1Hr1G083420.14 , HORVU1Hr1G083420.15 , HORVU1Hr1G083420.12 , HORVU1Hr1G083420.13 , HORVU1Hr1G083420.10 , HORVU1Hr1G083420.11 , HORVU3Hr1G071550.3 , HORVU3Hr1G071550.2 , HORVU3Hr1G071550.1 , HORVU3Hr1G071550.5 , HORVU3Hr1G071550.4 , HORVU5Hr1G094380.10 , HORVU5Hr1G094380.13 , HORVU5Hr1G094380.12 , HORVU5Hr1G094380.14 , HORVU4Hr1G073650.5 , HORVU4Hr1G073650.4 , HORVU4Hr1G073650.7 , HORVU4Hr1G073650.6 , HORVU4Hr1G073650.1 , HORVU4Hr1G073650.3 , HORVU4Hr1G073650.2 , HORVU7Hr1G056820.1 , HORVU7Hr1G056820.2 , HORVU7Hr1G056820.3 , HORVU5Hr1G094380.9 , HORVU5Hr1G094380.8 , HORVU5Hr1G094380.5 , HORVU5Hr1G094380.4 , HORVU5Hr1G094380.7 , HORVU5Hr1G094380.6 , HORVU5Hr1G094380.1 , HORVU5Hr1G094380.3 , HORVU5Hr1G094380.2 , HORVU5Hr1G105770.4 , HORVU5Hr1G105770.1 , HORVU5Hr1G105770.3 , HORVU5Hr1G105770.2
Wheat TraesCS7D02G270600 , TraesCS7D02G270600 , TraesCS1A02G375600 , TraesCS5A02G383800 , TraesCS5B02G440700 , TraesCS5B02G440700 , TraesCS7B02G168300 , TraesCS7B02G168300 , TraesCS2B02G105100 , TraesCS5D02G445100 , TraesCS5D02G445100 , TraesCS3A02G289200 , TraesCS4B02G278100 , TraesCS1A02G375600 , TraesCS2A02G089300 , TraesCS3D02G289000 , TraesCS4A02G027700 , TraesCS2D02G087400 , TraesCS1D02G382900 , TraesCS1B02G396000 , TraesCS5B02G440700 , TraesCS1B02G396000 , TraesCS1B02G396000 , TraesCS5A02G437900 , TraesCS5A02G437900 , TraesCS5A02G437900
Populus -


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cDNA sequences
Sobic.001G243000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
2 Sobic.003G373150 - -
3 Sobic.010G006700 auxin-induced protein 5NG4, putative, expressed -
4 Sobic.001G159850 - -
5 Sobic.001G159850 - -
6 Sobic.001G159850 - -
7 Sobic.001G159850 - -
8 Sobic.001G159850 - -
9 Sobic.001G159850 - -
10 Sobic.001G159850 - -
11 Sobic.001G159850 - -
12 Sobic.001G159850 - -
13 Sobic.001G159850 - -
14 Sobic.001G159850 - -
15 Sobic.001G159850 - -
16 Sobic.001G159850 - -
17 Sobic.001G159850 - -
18 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
19 Sobic.004G331300 AP2 domain containing protein, expressed -
20 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G243000 Sobic001G243000 Sobic001G125100 Sobic001G125100 Sobic001G243000--Sobic001G125100 Sobic003G373150 Sobic003G373150 Sobic001G243000--Sobic003G373150 Sobic010G006700 Sobic010G006700 Sobic001G243000--Sobic010G006700 Sobic001G159850 Sobic001G159850 Sobic001G243000--Sobic001G159850 Sobic003G078501 Sobic003G078501 Sobic001G125100--Sobic003G078501 Sobic001G125100--Sobic010G006700 Sobic001G125100--Sobic003G373150 Sobic001G125100--Sobic001G159850 Sobic004G310600 Sobic004G310600 Sobic003G373150--Sobic004G310600 Sobic003G373150--Sobic001G125100 Sobic009G000700 Sobic009G000700 Sobic003G373150--Sobic009G000700 Sobic003G373150--Sobic010G006700 Sobic004G283201 Sobic004G283201 Sobic003G373150--Sobic004G283201 Sobic003G373150--Sobic003G078501 Sobic006G055600 Sobic006G055600 Sobic003G373150--Sobic006G055600 Sobic006G267900 Sobic006G267900 Sobic003G373150--Sobic006G267900 Sobic004G278200 Sobic004G278200 Sobic003G373150--Sobic004G278200 Sobic004G331300 Sobic004G331300 Sobic010G006700--Sobic004G331300 Sobic010G006700--Sobic003G078501 Sobic010G006700--Sobic009G000700 Sobic010G006700--Sobic001G159850 Sobic001G159850--Sobic001G159850
Octagon: transcription factors


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