Gene annotation
Transcriptome id Sobic.006G055600.2,Sobic.006G055600.1
Synonym ATHSP70, HSP70, Sb06g014400,
Functional annotation expressed high in San Chi San (an efficient nitrogen user) (PubMedID : 28697783)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
DnaK family protein, putative, expressed
UniProt A0A1B6PKD6 , A0A1B6PKD4
Pfam PF00012
Panther DB PTHR19375 PTHR19375:SF232
NCBI CDD -
KEGG Orthology K03283; heat shock 70kDa protein 1/2/6/8
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12580 : heat shock protein 70
RAP-DB (Rice) LOC_Os05g38530.1 : DnaK family protein, putative, expressed
MaizeGDB (Corn) Zm00025a052745 , Zm00025a025406 , Zm00025a004244 , Zm00025a026925 , Zm00025a039687 , Zm00025a037698 , Zm00025a001857
Brachypodium KQK22333 , KQJ86243 , KQK12434 , KQK10507 , KQK22327 , KQJ83914 , KQK22319 , KQK22314 , KQK05900
Barley HORVU4Hr1G059260.4 , HORVU4Hr1G059260.1 , HORVU4Hr1G059260.2 , HORVU4Hr1G059260.3 , HORVU3Hr1G086500.10 , HORVU3Hr1G086500.11 , HORVU3Hr1G086500.12 , HORVU3Hr1G086500.13 , HORVU3Hr1G086500.7 , HORVU3Hr1G086500.4 , HORVU3Hr1G086500.5 , HORVU3Hr1G086500.3 , HORVU3Hr1G086500.1 , HORVU3Hr1G086500.8 , HORVU3Hr1G086500.9 , HORVU5Hr1G021310.2 , HORVU5Hr1G021310.1 , HORVU6Hr1G094830.1 , HORVU1Hr1G072220.6 , HORVU1Hr1G072220.7 , HORVU1Hr1G072220.4 , HORVU1Hr1G072220.5 , HORVU1Hr1G072220.2 , HORVU1Hr1G072220.3 , HORVU1Hr1G072220.1 , HORVU5Hr1G078400.1 , HORVU5Hr1G078400.2 , HORVU2Hr1G122760.2 , HORVU2Hr1G122760.1 , HORVU6Hr1G081460.1 , HORVU6Hr1G081460.3 , HORVU6Hr1G081460.2 , HORVU5Hr1G021300.11 , HORVU5Hr1G021300.10 , HORVU5Hr1G021300.12 , HORVU5Hr1G113180.1 , HORVU5Hr1G113180.3 , HORVU5Hr1G113180.2 , HORVU5Hr1G113180.5 , HORVU5Hr1G113180.4 , HORVU2Hr1G122800.1 , HORVU4Hr1G059390.5 , HORVU5Hr1G021300.8 , HORVU5Hr1G021300.5 , HORVU5Hr1G021300.4 , HORVU5Hr1G021300.7 , HORVU5Hr1G021300.6 , HORVU5Hr1G021300.3 , HORVU5Hr1G021300.2 , HORVU4Hr1G059390.4 , HORVU3Hr1G086500.2 , HORVU4Hr1G059390.6 , HORVU4Hr1G059390.7 , HORVU5Hr1G021300.9 , HORVU4Hr1G059390.1 , HORVU4Hr1G059390.2 , HORVU4Hr1G059390.3
Wheat TraesCS6B02G367800 , TraesCS4B02G142400 , TraesCS4B02G206700 , TraesCS3D02G352400 , TraesCS3D02G352400 , TraesCS5A02G479300 , TraesCS4D02G206600 , TraesCS5B02G129700 , TraesCS5B02G129700 , TraesCS5B02G087700 , TraesCS5B02G087700 , TraesCS5B02G087700 , TraesCS5B02G087700 , TraesCS6D02G317700 , TraesCS4B02G142400 , TraesCS4A02G175100 , TraesCS6A02G342200 , TraesCS3D02G351900 , TraesCS4D02G207500 , TraesCS5D02G492900 , TraesCS5D02G492900 , TraesCS1B02G294300 , TraesCS6A02G337100 , TraesCS6A02G337100 , TraesCS6A02G337100 , TraesCS6A02G337100 , TraesCS3B02G390700 , TraesCS5B02G492500 , TraesCS5B02G298000 , TraesCS5B02G492500 , TraesCS5D02G492900 , TraesCS5D02G093900 , TraesCS6B02G374500 , TraesCS2B02G374700 , TraesCS1A02G285000 , TraesCS1A02G285000 , TraesCS1D02G284000 , TraesCS1D02G284000 , TraesCS4D02G140800 , TraesCS3B02G390800 , TraesCS4A02G097900 , TraesCS4A02G098600 , TraesCS4A02G098600 , TraesCS4A02G097900 , TraesCS4B02G205700 , TraesCS5A02G078000
Populus PNT52617


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G283201 - -
2 Sobic.006G005600 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
3 Sobic.001G092600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
4 Sobic.003G373150 - -
5 Sobic.006G184800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
6 Sobic.009G163900 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
7 Sobic.004G321000 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
8 Sobic.004G278200 DUF581 domain containing protein, expressed -
9 Sobic.009G201500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@HSP101 Heat shock protein 101("PubMedID : 26759170,PubMedID : 24597475")@heat shock protein 101, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
10 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
11 Sobic.004G283300 AP2 domain containing protein, expressed -
12 Sobic.004G245850 - -
13 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
14 Sobic.009G231400 Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
15 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
16 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
17 Sobic.003G078501 - -
18 Sobic.010G076700 expressed protein -
19 Sobic.002G271100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
20 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -


Gene co-expression network
sample Sobic006G055600 Sobic006G055600 Sobic004G283201 Sobic004G283201 Sobic006G055600--Sobic004G283201 Sobic006G005600 Sobic006G005600 Sobic006G055600--Sobic006G005600 Sobic001G092600 Sobic001G092600 Sobic006G055600--Sobic001G092600 Sobic003G373150 Sobic003G373150 Sobic006G055600--Sobic003G373150 Sobic006G184800 Sobic006G184800 Sobic006G055600--Sobic006G184800 Sobic009G163900 Sobic009G163900 Sobic006G055600--Sobic009G163900 Sobic004G321000 Sobic004G321000 Sobic006G055600--Sobic004G321000 Sobic004G278200 Sobic004G278200 Sobic006G055600--Sobic004G278200 Sobic009G201500 Sobic009G201500 Sobic006G055600--Sobic009G201500 Sobic004G283201--Sobic006G055600 Sobic004G283201--Sobic006G005600 Sobic004G283201--Sobic003G373150 Sobic004G283201--Sobic006G184800 Sobic004G283201--Sobic001G092600 Sobic004G283300 Sobic004G283300 Sobic004G283201--Sobic004G283300 Sobic010G016500 Sobic010G016500 Sobic004G283201--Sobic010G016500 Sobic001G125100 Sobic001G125100 Sobic004G283201--Sobic001G125100 Sobic004G283201--Sobic009G201500 Sobic006G005600--Sobic006G055600 Sobic006G005600--Sobic001G092600 Sobic006G005600--Sobic004G283201 Sobic006G005600--Sobic009G201500 Sobic006G005600--Sobic009G163900 Sobic006G005600--Sobic006G184800 Sobic006G005600--Sobic003G373150 Sobic006G005600--Sobic004G283300 Sobic006G005600--Sobic004G278200 Sobic001G092600--Sobic006G005600 Sobic001G092600--Sobic006G055600 Sobic001G092600--Sobic009G163900 Sobic001G092600--Sobic004G283201 Sobic001G092600--Sobic006G184800 Sobic009G231400 Sobic009G231400 Sobic001G092600--Sobic009G231400 Sobic001G092600--Sobic009G201500 Sobic001G092600--Sobic003G373150 Sobic001G092600--Sobic004G321000 Sobic004G310600 Sobic004G310600 Sobic003G373150--Sobic004G310600 Sobic003G373150--Sobic001G125100 Sobic009G000700 Sobic009G000700 Sobic003G373150--Sobic009G000700 Sobic010G006700 Sobic010G006700 Sobic003G373150--Sobic010G006700 Sobic003G373150--Sobic004G283201 Sobic003G078501 Sobic003G078501 Sobic003G373150--Sobic003G078501 Sobic003G373150--Sobic006G055600 Sobic006G267900 Sobic006G267900 Sobic003G373150--Sobic006G267900 Sobic003G373150--Sobic004G278200 Sobic006G184800--Sobic004G283201 Sobic006G184800--Sobic006G055600 Sobic006G184800--Sobic009G163900 Sobic006G184800--Sobic001G092600 Sobic006G184800--Sobic006G005600 Sobic004G245850 Sobic004G245850 Sobic006G184800--Sobic004G245850 Sobic001G476400 Sobic001G476400 Sobic006G184800--Sobic001G476400 Sobic006G184800--Sobic009G231400 Sobic006G184800--Sobic004G283300 Sobic009G163900--Sobic009G231400 Sobic009G163900--Sobic001G092600 Sobic009G163900--Sobic006G184800 Sobic009G163900--Sobic006G005600 Sobic009G163900--Sobic006G055600 Sobic009G163900--Sobic004G321000 Sobic010G076700 Sobic010G076700 Sobic009G163900--Sobic010G076700 Sobic009G163900--Sobic004G245850 Sobic009G163900--Sobic004G278200 Sobic004G321000--Sobic006G055600 Sobic004G321000--Sobic009G163900 Sobic004G321000--Sobic004G278200 Sobic004G321000--Sobic003G373150 Sobic004G321000--Sobic006G005600 Sobic004G321000--Sobic001G092600 Sobic004G321000--Sobic009G201500 Sobic004G321000--Sobic004G283201 Sobic004G321000--Sobic006G184800 Sobic004G278200--Sobic003G373150 Sobic007G166900 Sobic007G166900 Sobic004G278200--Sobic007G166900 Sobic004G278200--Sobic006G055600 Sobic001G080300 Sobic001G080300 Sobic004G278200--Sobic001G080300 Sobic002G427400 Sobic002G427400 Sobic004G278200--Sobic002G427400 Sobic004G278200--Sobic004G321000 Sobic001G063600 Sobic001G063600 Sobic004G278200--Sobic001G063600 Sobic003G032900 Sobic003G032900 Sobic004G278200--Sobic003G032900 Sobic004G278200--Sobic004G283201 Sobic009G201500--Sobic006G005600 Sobic009G201500--Sobic001G092600 Sobic009G201500--Sobic006G055600 Sobic009G201500--Sobic004G283201 Sobic001G286000 Sobic001G286000 Sobic009G201500--Sobic001G286000 Sobic009G201500--Sobic003G373150 Sobic009G201500--Sobic004G321000 Sobic003G233900 Sobic003G233900 Sobic009G201500--Sobic003G233900 Sobic009G201500--Sobic004G283300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.