Gene annotation
Transcriptome id Sobic.004G245850.1
Synonym -
Functional annotation -
UniProt A0A1Z5RP23
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G184800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
2 Sobic.009G163900 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
3 Sobic.006G055600 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
4 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
5 Sobic.001G093200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
6 Sobic.004G283201 - -
7 Sobic.002G427400 COBRA-like protein 7 precursor, putative, expressed -
8 Sobic.001G092600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
9 Sobic.004G278200 DUF581 domain containing protein, expressed -
10 Sobic.006G005600 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
11 Sobic.001G476400 - -
12 Sobic.009G231400 Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
13 Sobic.010G076700 expressed protein -
14 Sobic.001G051600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed -
15 Sobic.003G373150 - -
16 Sobic.001G080300 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.004G321000 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
18 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
19 Sobic.005G122500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@IQ calmodulin-binding and BAG domain containing protein, putative, expressed -
20 Sobic.001G420100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8


Gene co-expression network
sample Sobic004G245850 Sobic004G245850 Sobic006G184800 Sobic006G184800 Sobic004G245850--Sobic006G184800 Sobic009G163900 Sobic009G163900 Sobic004G245850--Sobic009G163900 Sobic006G055600 Sobic006G055600 Sobic004G245850--Sobic006G055600 Sobic008G159100 Sobic008G159100 Sobic004G245850--Sobic008G159100 Sobic001G093200 Sobic001G093200 Sobic004G245850--Sobic001G093200 Sobic004G283201 Sobic004G283201 Sobic004G245850--Sobic004G283201 Sobic002G427400 Sobic002G427400 Sobic004G245850--Sobic002G427400 Sobic001G092600 Sobic001G092600 Sobic004G245850--Sobic001G092600 Sobic004G278200 Sobic004G278200 Sobic004G245850--Sobic004G278200 Sobic006G184800--Sobic004G283201 Sobic006G184800--Sobic006G055600 Sobic006G184800--Sobic009G163900 Sobic006G184800--Sobic001G092600 Sobic006G005600 Sobic006G005600 Sobic006G184800--Sobic006G005600 Sobic006G184800--Sobic004G245850 Sobic001G476400 Sobic001G476400 Sobic006G184800--Sobic001G476400 Sobic009G231400 Sobic009G231400 Sobic006G184800--Sobic009G231400 Sobic004G283300 Sobic004G283300 Sobic006G184800--Sobic004G283300 Sobic009G163900--Sobic009G231400 Sobic009G163900--Sobic001G092600 Sobic009G163900--Sobic006G184800 Sobic009G163900--Sobic006G005600 Sobic009G163900--Sobic006G055600 Sobic004G321000 Sobic004G321000 Sobic009G163900--Sobic004G321000 Sobic010G076700 Sobic010G076700 Sobic009G163900--Sobic010G076700 Sobic009G163900--Sobic004G245850 Sobic009G163900--Sobic004G278200 Sobic006G055600--Sobic004G283201 Sobic006G055600--Sobic006G005600 Sobic006G055600--Sobic001G092600 Sobic003G373150 Sobic003G373150 Sobic006G055600--Sobic003G373150 Sobic006G055600--Sobic006G184800 Sobic006G055600--Sobic009G163900 Sobic006G055600--Sobic004G321000 Sobic006G055600--Sobic004G278200 Sobic009G201500 Sobic009G201500 Sobic006G055600--Sobic009G201500 Sobic001G063600 Sobic001G063600 Sobic008G159100--Sobic001G063600 Sobic008G159100--Sobic002G427400 Sobic008G000500 Sobic008G000500 Sobic008G159100--Sobic008G000500 Sobic001G051600 Sobic001G051600 Sobic008G159100--Sobic001G051600 Sobic008G159100--Sobic001G476400 Sobic004G264500 Sobic004G264500 Sobic008G159100--Sobic004G264500 Sobic005G231700 Sobic005G231700 Sobic008G159100--Sobic005G231700 Sobic008G159100--Sobic004G245850 Sobic001G080300 Sobic001G080300 Sobic008G159100--Sobic001G080300 Sobic001G093200--Sobic009G231400 Sobic004G249900 Sobic004G249900 Sobic001G093200--Sobic004G249900 Sobic001G420100 Sobic001G420100 Sobic001G093200--Sobic001G420100 Sobic005G122500 Sobic005G122500 Sobic001G093200--Sobic005G122500 Sobic001G093200--Sobic009G163900 Sobic004G228900 Sobic004G228900 Sobic001G093200--Sobic004G228900 Sobic001G093200--Sobic004G245850 Sobic001G093200--Sobic001G092600 Sobic001G093200--Sobic006G184800 Sobic004G283201--Sobic006G055600 Sobic004G283201--Sobic006G005600 Sobic004G283201--Sobic003G373150 Sobic004G283201--Sobic006G184800 Sobic004G283201--Sobic001G092600 Sobic004G283201--Sobic004G283300 Sobic010G016500 Sobic010G016500 Sobic004G283201--Sobic010G016500 Sobic001G125100 Sobic001G125100 Sobic004G283201--Sobic001G125100 Sobic004G283201--Sobic009G201500 Sobic007G166900 Sobic007G166900 Sobic002G427400--Sobic007G166900 Sobic002G427400--Sobic001G080300 Sobic002G427400--Sobic008G159100 Sobic002G427400--Sobic004G278200 Sobic002G427400--Sobic003G373150 Sobic010G006700 Sobic010G006700 Sobic002G427400--Sobic010G006700 Sobic003G225900 Sobic003G225900 Sobic002G427400--Sobic003G225900 Sobic003G032900 Sobic003G032900 Sobic002G427400--Sobic003G032900 Sobic006G267900 Sobic006G267900 Sobic002G427400--Sobic006G267900 Sobic001G092600--Sobic006G005600 Sobic001G092600--Sobic006G055600 Sobic001G092600--Sobic009G163900 Sobic001G092600--Sobic004G283201 Sobic001G092600--Sobic006G184800 Sobic001G092600--Sobic009G231400 Sobic001G092600--Sobic009G201500 Sobic001G092600--Sobic003G373150 Sobic001G092600--Sobic004G321000 Sobic004G278200--Sobic003G373150 Sobic004G278200--Sobic007G166900 Sobic004G278200--Sobic006G055600 Sobic004G278200--Sobic001G080300 Sobic004G278200--Sobic002G427400 Sobic004G278200--Sobic004G321000 Sobic004G278200--Sobic001G063600 Sobic004G278200--Sobic003G032900 Sobic004G278200--Sobic004G283201
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.