Gene annotation
Transcriptome id Sobic.001G051600.1
Synonym AATP1, Sb01g004740
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ATPase, putative, expressed
UniProt C5WX16
Pfam PF00004 PF14363
Panther DB PTHR23070 PTHR23070:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G40010 : AAA-ATPase 1
RAP-DB (Rice) LOC_Os03g58790.1 : ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a018315 , Zm00025a016039 , Zm00025a052319 , Zm00025a045292 , Zm00025a004879 , Zm00025a004881 , Zm00025a008606
Brachypodium KQK15981 , KQJ90448 , KQJ85588 , KQK20482 , KQK20481 , KQJ85593 , KQJ85594 , KQK15975 , PNT75004 , PNT75003 , PNT76854 , PNT76855 , PNT76856 , PNT76857 , KQK17345 , KQJ98547 , KQJ90344 , KQK20476 , KQK20475
Barley HORVU5Hr1G000640.9 , HORVU5Hr1G000640.8 , HORVU5Hr1G000640.1 , HORVU5Hr1G000640.3 , HORVU5Hr1G000640.5 , HORVU5Hr1G000640.4 , HORVU5Hr1G000640.7 , HORVU5Hr1G000640.6 , HORVU7Hr1G098240.1 , HORVU2Hr1G046240.3 , HORVU5Hr1G026270.4 , HORVU5Hr1G026270.5 , HORVU5Hr1G026270.6 , HORVU5Hr1G026270.1 , HORVU5Hr1G026270.2 , HORVU5Hr1G026270.3 , HORVU3Hr1G117690.10 , HORVU1Hr1G063390.3 , HORVU3Hr1G114150.2 , HORVU3Hr1G117690.3 , HORVU3Hr1G117690.2 , HORVU3Hr1G117690.1 , HORVU3Hr1G117690.7 , HORVU3Hr1G117690.6 , HORVU3Hr1G117690.5 , HORVU3Hr1G117690.4 , HORVU3Hr1G117690.9 , HORVU3Hr1G117690.8 , HORVU3Hr1G086670.1 , HORVU3Hr1G086670.2 , HORVU3Hr1G086670.3 , HORVU3Hr1G086670.4 , HORVU3Hr1G086670.5 , HORVU6Hr1G021770.3 , HORVU6Hr1G021770.2 , HORVU6Hr1G021770.1 , HORVU6Hr1G021770.4 , HORVU2Hr1G046240.1 , HORVU1Hr1G063390.4 , HORVU1Hr1G063390.5 , HORVU1Hr1G063390.1 , HORVU1Hr1G063390.2 , HORVU5Hr1G107410.2 , HORVU5Hr1G107410.3 , HORVU5Hr1G107410.4 , HORVU7Hr1G098220.4 , HORVU2Hr1G046180.2 , HORVU7Hr1G098220.6 , HORVU7Hr1G098220.1 , HORVU7Hr1G098220.2 , HORVU7Hr1G098220.3 , HORVU5Hr1G000650.1 , HORVU2Hr1G046180.3 , HORVU7Hr1G098220.5 , HORVU2Hr1G046180.1 , HORVU2Hr1G046180.5 , HORVU2Hr1G046180.4 , HORVU5Hr1G063340.3 , HORVU5Hr1G063340.2 , HORVU5Hr1G063340.1 , HORVU7Hr1G098210.1
Wheat TraesCS1D02G439400 , TraesCS3A02G357100 , TraesCS2A02G221700 , TraesCS1A02G430200 , TraesCS3B02G389700 , TraesCS3D02G350900 , TraesCS2D02G227400 , TraesCS3D02G351000 , TraesCS2D02G227500 , TraesCS3A02G356800 , TraesCS1A02G430100
Populus -


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cDNA sequences
Sobic.001G051600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G489600 expressed protein -
2 Sobic.001G476400 - -
3 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
4 Sobic.002G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
5 Sobic.007G057100 expressed protein -
6 Sobic.004G051166 - -
7 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
8 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
9 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
10 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
11 Sobic.001G077700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.010G076700 expressed protein -
13 Sobic.009G258300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
14 Sobic.006G184800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
15 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
16 Sobic.004G280900 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.010G030900 glycosyltransferase, putative, expressed -
18 Sobic.004G283300 AP2 domain containing protein, expressed -
19 Sobic.002G344700 remorin, putative, expressed -
20 Sobic.003G296700 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic001G051600 Sobic001G051600 Sobic001G489600 Sobic001G489600 Sobic001G051600--Sobic001G489600 Sobic001G476400 Sobic001G476400 Sobic001G051600--Sobic001G476400 Sobic006G095600 Sobic006G095600 Sobic001G051600--Sobic006G095600 Sobic002G203000 Sobic002G203000 Sobic001G051600--Sobic002G203000 Sobic007G057100 Sobic007G057100 Sobic001G051600--Sobic007G057100 Sobic004G051166 Sobic004G051166 Sobic001G051600--Sobic004G051166 Sobic008G159100 Sobic008G159100 Sobic001G051600--Sobic008G159100 Sobic001G081600 Sobic001G081600 Sobic001G051600--Sobic001G081600 Sobic004G025000 Sobic004G025000 Sobic001G051600--Sobic004G025000 Sobic001G489600--Sobic001G051600 Sobic001G489600--Sobic006G095600 Sobic001G077700 Sobic001G077700 Sobic001G489600--Sobic001G077700 Sobic001G489600--Sobic002G203000 Sobic001G489600--Sobic007G057100 Sobic004G280900 Sobic004G280900 Sobic001G489600--Sobic004G280900 Sobic001G489600--Sobic001G476400 Sobic009G071800 Sobic009G071800 Sobic001G489600--Sobic009G071800 Sobic004G286600 Sobic004G286600 Sobic001G489600--Sobic004G286600 Sobic001G063600 Sobic001G063600 Sobic001G476400--Sobic001G063600 Sobic001G476400--Sobic001G051600 Sobic001G473900 Sobic001G473900 Sobic001G476400--Sobic001G473900 Sobic010G076600 Sobic010G076600 Sobic001G476400--Sobic010G076600 Sobic001G476400--Sobic001G081600 Sobic010G080400 Sobic010G080400 Sobic001G476400--Sobic010G080400 Sobic001G476400--Sobic006G095600 Sobic004G283300 Sobic004G283300 Sobic001G476400--Sobic004G283300 Sobic001G476400--Sobic001G489600 Sobic006G095600--Sobic001G489600 Sobic006G095600--Sobic002G203000 Sobic006G095600--Sobic001G051600 Sobic006G095600--Sobic001G077700 Sobic006G095600--Sobic009G071800 Sobic006G095600--Sobic007G057100 Sobic004G084100 Sobic004G084100 Sobic006G095600--Sobic004G084100 Sobic006G095600--Sobic001G473900 Sobic006G095600--Sobic001G476400 Sobic002G203000--Sobic001G077700 Sobic002G203000--Sobic009G071800 Sobic002G203000--Sobic006G095600 Sobic002G203000--Sobic001G489600 Sobic010G076700 Sobic010G076700 Sobic002G203000--Sobic010G076700 Sobic009G258300 Sobic009G258300 Sobic002G203000--Sobic009G258300 Sobic002G203000--Sobic001G473900 Sobic002G203000--Sobic007G057100 Sobic002G248100 Sobic002G248100 Sobic002G203000--Sobic002G248100 Sobic007G057100--Sobic001G489600 Sobic007G057100--Sobic002G203000 Sobic001G513700 Sobic001G513700 Sobic007G057100--Sobic001G513700 Sobic007G057100--Sobic006G095600 Sobic007G057100--Sobic004G286600 Sobic007G057100--Sobic001G077700 Sobic007G057100--Sobic001G051600 Sobic004G147900 Sobic004G147900 Sobic007G057100--Sobic004G147900 Sobic007G057100--Sobic001G473900 Sobic004G051166--Sobic001G051600 Sobic001G482700 Sobic001G482700 Sobic004G051166--Sobic001G482700 Sobic004G051166--Sobic001G473900 Sobic004G051166--Sobic001G476400 Sobic004G051166--Sobic007G057100 Sobic004G051166--Sobic006G095600 Sobic004G051166--Sobic001G489600 Sobic004G051166--Sobic004G280900 Sobic004G051166--Sobic010G076600 Sobic008G159100--Sobic001G063600 Sobic002G427400 Sobic002G427400 Sobic008G159100--Sobic002G427400 Sobic008G000500 Sobic008G000500 Sobic008G159100--Sobic008G000500 Sobic008G159100--Sobic001G051600 Sobic008G159100--Sobic001G476400 Sobic004G264500 Sobic004G264500 Sobic008G159100--Sobic004G264500 Sobic005G231700 Sobic005G231700 Sobic008G159100--Sobic005G231700 Sobic004G245850 Sobic004G245850 Sobic008G159100--Sobic004G245850 Sobic001G080300 Sobic001G080300 Sobic008G159100--Sobic001G080300 Sobic001G462800 Sobic001G462800 Sobic001G081600--Sobic001G462800 Sobic002G217100 Sobic002G217100 Sobic001G081600--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic001G081600--Sobic006G210300 Sobic001G081600--Sobic004G283300 Sobic002G197600 Sobic002G197600 Sobic001G081600--Sobic002G197600 Sobic004G281200 Sobic004G281200 Sobic001G081600--Sobic004G281200 Sobic002G344700 Sobic002G344700 Sobic001G081600--Sobic002G344700 Sobic001G081600--Sobic004G025000 Sobic001G081600--Sobic001G476400 Sobic004G025000--Sobic001G081600 Sobic002G379400 Sobic002G379400 Sobic004G025000--Sobic002G379400 Sobic004G025000--Sobic006G095600 Sobic004G025000--Sobic002G344700 Sobic002G330300 Sobic002G330300 Sobic004G025000--Sobic002G330300 Sobic004G025000--Sobic001G476400 Sobic004G025000--Sobic001G063600 Sobic001G314700 Sobic001G314700 Sobic004G025000--Sobic001G314700 Sobic004G025000--Sobic010G076700
Octagon: transcription factors


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