Gene annotation
| Transcriptome id | Sobic.001G489600.1 |
|---|---|
| Synonym | Sb01g045810 |
| Functional annotation | expressed protein |
| UniProt | C5WWR3 |
| Pfam | PF05627 |
| Panther DB | PTHR33882 PTHR33882:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G64850 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os03g07380.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a000856 , Zm00025a053338 , Zm00025a007003 , Zm00025a017815 |
| Brachypodium | KQK23427 , PNT67356 |
| Barley | HORVU6Hr1G039070.1 , HORVU6Hr1G053790.1 , HORVU2Hr1G071440.4 , HORVU2Hr1G071440.1 , HORVU2Hr1G071440.2 , HORVU2Hr1G071440.3 , HORVU4Hr1G075110.1 , HORVU4Hr1G075110.2 , HORVU4Hr1G075110.3 , HORVU2Hr1G087230.1 , HORVU5Hr1G046790.1 , HORVU3Hr1G059370.1 , HORVU3Hr1G044700.3 , HORVU5Hr1G029200.5 |
| Wheat | TraesCS4B02G286900 , TraesCS4D02G285600 , TraesCS4A02G017200 |
| Populus | - |
JBrowse
| Sobic.001G489600 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G051600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed | - |
| 2 | Sobic.006G095600 | lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed | K00454: lipoxygenase |
| 3 | Sobic.001G077700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 4 | Sobic.002G203000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 5 | Sobic.007G057100 | expressed protein | - |
| 6 | Sobic.004G280900 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 7 | Sobic.001G476400 | - | - |
| 8 | Sobic.009G071800 | 6-phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 9 | Sobic.004G286600 | Protecting the plants under varied stress situations(PubMedID : 26536883)@dehydrin, putative, expressed | - |
| 10 | Sobic.004G257300 | GPI-anchored protein, putative, expressed | - |
| 11 | Sobic.001G473900 | Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed | K09286: EREBP-like factor |
| 12 | Sobic.002G354900 | "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@gibberellin response modulator protein, putative, expressed | - |
| 13 | Sobic.010G076700 | expressed protein | - |
| 14 | Sobic.004G084100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 15 | Sobic.002G294700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 16 | Sobic.007G077001 | - | - |
| 17 | Sobic.002G374100 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 18 | Sobic.009G217600 | STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 19 | Sobic.002G248100 | expressed protein | - |
| 20 | Sobic.004G025000 | CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
Gene co-expression network
Octagon: transcription factors
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